PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002705.1_g000018.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 308aa    MW: 33542.3 Da    PI: 7.474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002705.1_g000018.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.3e-17125184256
                                T--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +k+ ++tkeq   Le++F+     ++  ++ ++++eLA+kl+L+ rqV vWFqNrRa+ k
  Rmu_sc0002705.1_g000018.1 125 KKKLRLTKEQSLLLEDMFKehhtlNTVSVNSRQKQELAQKLNLSARQVEVWFQNRRARTK 184
                                788899*************44443444556799*************************98 PP
2HD-ZIP_I/II109.62.2e-35125219191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLe.....perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                +kk+rl+keq+ lLE++F+e+++L+     +++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+++L++++++l+een+r
  Rmu_sc0002705.1_g000018.1 125 KKKLRLTKEQSLLLEDMFKEHHTLNtvsvnSRQKQELAQKLNLSARQVEVWFQNRRARTKLKQTEVDCDQLRKCCENLTEENRR 208
                                59********************9963333369**************************************************** PP

                HD-ZIP_I/II  80 LekeveeLreel 91 
                                L+kev+eLr +l
  Rmu_sc0002705.1_g000018.1 209 LQKEVQELR-AL 219
                                ********9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGDKNDELGL SLGLGLGYGA KPSSSSSSSF HLNLMQNPET NHQRVFGIFG FTDRNATSFR  60
RGIDVNQAAV GDFEDENGVS SPNSTVSSLS GKRSERGEDN EAERTSCSLG GSDDEDGIGG  120
GDTSKKKLRL TKEQSLLLED MFKEHHTLNT VSVNSRQKQE LAQKLNLSAR QVEVWFQNRR  180
ARTKLKQTEV DCDQLRKCCE NLTEENRRLQ KEVQELRALK LSPQFYMQMN PPTTLTMCPS  240
CQCVGVSSSS SSSASTTTAS STVPATSPTG HPGQPTIHRP VPISPWATLP IPQHRPVDAP  300
APAPAPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130SKKKLRL
2179187RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-69HD-ZIP family protein