PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002752.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 372aa MW: 41229.8 Da PI: 8.3534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002752.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	300	345	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Rmu_sc0002752.1_g000005.1 300 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 345 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MYNSAPPIKS WQTELPLMDS NTHLNLEHQQ PHHQPNSGLL RFRSAPSSMF AENNNAADLG 60 VHKGTLIEGG SDSDRLFSRF VSYNNADLGV HKGTLIEGGS DSDRLFSRFV SYSHSNDSES 120 WPSSFQEFED KSTVTEAAVT ASRMSSQHQQ QGFPGLPPHY PRQNSFGSGN GSYGLVGSAA 180 VEPHPQAKTV TSNLVRQSSS PAGLFSNNTS VQNGFPFGAW NDPSNFADNL GGMRRDQDND 240 QKLFSATQNG DLGNRIHILS HHLSLPKNSA EVAMEKFLQL QDSVPCKVRA KRGCATHPRS 300 IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKELQKQFKS LSDVRANCKC 360 LSMQKPVQNQ IV

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MYNSAPPIKS WQTELPLMDS NTHLNLEHQQ PHHQPNSGLL RFRSAPSSMF AENNNAADLG  60
VHKGTLIEGG SDSDRLFSRF VSYNNADLGV HKGTLIEGGS DSDRLFSRFV SYSHSNDSES  120
WPSSFQEFED KSTVTEAAVT ASRMSSQHQQ QGFPGLPPHY PRQNSFGSGN GSYGLVGSAA  180
VEPHPQAKTV TSNLVRQSSS PAGLFSNNTS VQNGFPFGAW NDPSNFADNL GGMRRDQDND  240
QKLFSATQNG DLGNRIHILS HHLSLPKNSA EVAMEKFLQL QDSVPCKVRA KRGCATHPRS  300
IAERVRRTRI SERMRKLQEL VPNMDKQTNT ADMLDLAVDY IKELQKQFKS LSDVRANCKC  360
LSMQKPVQNQ IV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-100	bHLH family protein