PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002759.1_g000041.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 368aa MW: 40304.2 Da PI: 8.4615

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002759.1_g000041.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.7e-16	22	110	2	71
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 Wt e+++Liea++ +eer ++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e Rmu_sc0002759.1_g000041.1 22 WTVGETMVLIEAKKMDEERRIMKRsgsgsgdhgadqtprsiskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVRE 105 ***********95555443222234555666666666666699************************************* PP trihelix 67 gekkr 71 ek+ Rmu_sc0002759.1_g000041.1 106 YEKRS 110 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR 60 SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA 120 SYWKLEKSER KERNLPTNMV PQIYESLVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY 180 AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPPTC 240 EGSDSDTSEH SDSTAKRRRR GGGASGGGGD QQQGISTSGT VSASTSSELG TAISRGASII 300 AEALQGCEES EERRHREILS LHERRIQIEE SKTEINRQGI NGLVDAINKL ANSIHALASN 360 SNQSSAPK

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MAEIQGGNSG SFVMRDYRKG NWTVGETMVL IEAKKMDEER RIMKRSGSGS GDHGADQTPR  60
SISKPAELRW KWVEDYCWKK GCLRSQNQCN DKWDNLMRDY KKVREYEKRS VGVGENKELA  120
SYWKLEKSER KERNLPTNMV PQIYESLVEV VEKREMGRIV VGGGGASVSG SISPNPNIGY  180
AVERPIISGI HQSTVLSPPP VLQQHLIQPQ PISAMHLLPA PLAAQPPPPL PYSQPIPPTC  240
EGSDSDTSEH SDSTAKRRRR GGGASGGGGD QQQGISTSGT VSASTSSELG TAISRGASII  300
AEALQGCEES EERRHREILS LHERRIQIEE SKTEINRQGI NGLVDAINKL ANSIHALASN  360
SNQSSAPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-58	Trihelix family protein