PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002798.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 226aa    MW: 25251.2 Da    PI: 9.104
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002798.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.61.6e-16768257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++R+ +t++q+++L+elF++   r p+ e+++++  +l    + + ++V++WF N+Ra+ek+
  Rmu_sc0002798.1_g000020.1  7 STRWIPTTDQIRILKELFYNkgVRSPNIEQIQRICLQLkwygKFEGKNVFYWFANQRAREKQ 68
                               58*****************7789*************************************97 PP
2Wus_type_Homeobox93.71.7e-30670265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++tRW Pt++Qi+iL+el++ +G+r+Pn e+iqri  +L+ yGk e+kNVfyWF N++aRe+qk+
  Rmu_sc0002798.1_g000020.1  6 SSTRWIPTTDQIRILKELFYnKGVRSPNIEQIQRICLQLKWYGKFEGKNVFYWFANQRAREKQKK 70
                               689**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MLRKKSSTRW IPTTDQIRIL KELFYNKGVR SPNIEQIQRI CLQLKWYGKF EGKNVFYWFA  60
NQRAREKQKK RSTSDVHVPM QRSGLVGDDN VTNWKHEDQY INFGSSAPAS ASSASVMIAF  120
NGQMGNYGGY GSMNMEKSSR DCSISAGGGT SSTFFDMNVE QTFMEQRGED HQEIETLSLF  180
PVHGEDIFGN MKTTSDGGGS HGGGSHTSLE LSLSCEGKAG KNFRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-27WOX family protein