PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002867.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 266aa    MW: 30447 Da    PI: 8.1973
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002867.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.6e-27855249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +ien   rqvtfskRr+g++KKA ELSvLCdaevavi+fsstgklye 
  Rmu_sc0002867.1_g000023.1  8 KIENLPARQVTFSKRRQGLFKKAGELSVLCDAEVAVIVFSSTGKLYES 55
                               79********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MNKIKIEKIE NLPARQVTFS KRRQGLFKKA GELSVLCDAE VAVIVFSSTG KLYESSSSRY  60
FSTMDIREGS QEIGSMMRAI GLDGLTSERY MHGTQKAKKD PPADEILYLM KTNGALQIAY  120
VEEVSTGRDE KEYYSVLVKY DNQLEKEMEI YRIKLPSPLK LGEGKPENQN HAIIFTRGDA  180
VQIIDMNQDN YFEEALKMRN LLEEYRHYHG IRKLTILGVR EHVFTGSVSH LLGLCQVRKQ  240
VVILGQQVLV NPLQVRMHYG HPDVFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-24MIKC_MADS family protein