PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002888.1_g000015.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 278aa    MW: 30793.6 Da    PI: 6.5174
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002888.1_g000015.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-141461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+ Ed+ l  ++k +G g W+  +++ g++R++k+c++rw++yl
  Rmu_sc0002888.1_g000015.1 14 RGAWTALEDKVLTSYIKAHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61
                               89********************************************97 PP
2Myb_DNA-binding48.52e-1567111147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Rmu_sc0002888.1_g000015.1  67 RGNISGDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                                6777889***************.*********.************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRSPCCSKE GLNRGAWTAL EDKVLTSYIK AHGEGKWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SGDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLVKKAKPES  120
HSGSSKETSP APTKFRPRTP SATATQPQVI RTKATRLTRM LVPSLPLLID DYSTTTSPLD  180
LRVPQTQSVS SLPEDAANTE VHIQGTDAMN FGCNGFQATA GEEEDAMGSY DIPLDDGMLN  240
DWTGNDNCDL EKYGASLDLD SLAFLLDSDD WLGQENGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-63MYB family protein