PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002888.1_g000038.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 563aa MW: 64207.5 Da PI: 6.3234

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002888.1_g000038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	100.1	1.8e-31	375	459	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+++ev aLi +r+++e+++++ lk+plWe+vs+ m++ g++rs+k+Ckekwen+nk+++k+k++ kkr +++s+tc+yf++ Rmu_sc0002888.1_g000038.1 375 RWPQSEVEALILVRSNIESKFQEPGLKGPLWEQVSASMASLGYQRSAKRCKEKWENINKYFRKTKDSPKKR-PQQSKTCSYFNK 457 8*******************************************************************8.99999***** PP trihelix 85 le 86 l+ Rmu_sc0002888.1_g000038.1 458 LD 459 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MQSNFEIADL PSQQHFMDTN SSSPVLPIFF NPQNQNHPSF HRQLEHQQLS HHHLVHPTPI 60 THELFQGLHP QPEQEQSGTL HWQMSPINFK LGLNENSASG EVALLDENSP LFLQSRPQNL 120 GFKSWQPQEF CTRKEPFWKP HETQGMKQKQ ATEGEICKEL ESKYRLYGEL EAIYSLGKIG 180 EVNNKQTGSG SAVTNENSPK NVDLVPVPFG VSHGLNGGPA ATDGVDDGSE ASIDEEVSYR 240 KVQKRKRKRR MKEQLSSSTT RFFEGLVKRV MDHQESLHHK YLALIEKMDR ERREREAAWR 300 LQEAEKHKRK AIAQLHEQAL ASKRESLIVL YIEKITGQKV NIPSREIPSL LQCDYSNGAM 360 EEELTPVKVD QTNSRWPQSE VEALILVRSN IESKFQEPGL KGPLWEQVSA SMASLGYQRS 420 AKRCKEKWEN INKYFRKTKD SPKKRPQQSK TCSYFNKLDQ LYSRTPVTNP SSSSYCSSNP 480 VVSIERQGYS ELLQAVLDGS ETQNLSSGNF EILSEIGSNR LDFDGLTNGK VEHLREDHGK 540 ERENHEDDGS MEEEDIDGID SDE

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MQSNFEIADL PSQQHFMDTN SSSPVLPIFF NPQNQNHPSF HRQLEHQQLS HHHLVHPTPI  60
THELFQGLHP QPEQEQSGTL HWQMSPINFK LGLNENSASG EVALLDENSP LFLQSRPQNL  120
GFKSWQPQEF CTRKEPFWKP HETQGMKQKQ ATEGEICKEL ESKYRLYGEL EAIYSLGKIG  180
EVNNKQTGSG SAVTNENSPK NVDLVPVPFG VSHGLNGGPA ATDGVDDGSE ASIDEEVSYR  240
KVQKRKRKRR MKEQLSSSTT RFFEGLVKRV MDHQESLHHK YLALIEKMDR ERREREAAWR  300
LQEAEKHKRK AIAQLHEQAL ASKRESLIVL YIEKITGQKV NIPSREIPSL LQCDYSNGAM  360
EEELTPVKVD QTNSRWPQSE VEALILVRSN IESKFQEPGL KGPLWEQVSA SMASLGYQRS  420
AKRCKEKWEN INKYFRKTKD SPKKRPQQSK TCSYFNKLDQ LYSRTPVTNP SSSSYCSSNP  480
VVSIERQGYS ELLQAVLDGS ETQNLSSGNF EILSEIGSNR LDFDGLTNGK VEHLREDHGK  540
ERENHEDDGS MEEEDIDGID SDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	250	KRKRKRR
2	244	251	KRKRKRRM
3	245	250	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-40	Trihelix family protein