PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002895.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 656aa    MW: 72942 Da    PI: 6.6782
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002895.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.91.7e-26201254155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr++W+ +LH++Fv av++L G++kA+Pk+il+lm+ + Lt+e+v+SHLQk+Rl
  Rmu_sc0002895.1_g000008.1 201 KPRVVWSVDLHRKFVAAVNKL-GIDKAVPKKILDLMNEDKLTRENVASHLQKFRL 254
                                79*******************.********************************8 PP
2Myb_DNA-binding34.54.8e-11203253148
                                TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                                r  W+ +++ ++v av++lG +   +k+I   m+  ++t++++ s++qk++
  Rmu_sc0002895.1_g000008.1 203 RVVWSVDLHRKFVAAVNKLGIDkaVPKKILDLMNeDKLTRENVASHLQKFR 253
                                678********************************99************97 PP
3Response_reg80.94.2e-27201281109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vlivdD+ + +++l+++l k +y +v++++++  alell+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++++g+
  Rmu_sc0002895.1_g000008.1  20 VLIVDDDVTCLRVLETMLHKCQY-HVTATSHAFTALELLRENRnkFDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMLSSNGD 101
                                8**********************.***************999889*******************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 e++ + +  Ga d+l+Kp+ ++el +
  Rmu_sc0002895.1_g000008.1 102 RELVMKGVTHGACDYLVKPVRIQELKN 128
                                ************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    
MTIEPVLDDQ RDQFPLGMRV LIVDDDVTCL RVLETMLHKC QYHVTATSHA FTALELLREN  60
RNKFDLVISD VQMPDMDGFK LLELVGLEMD LPVIMLSSNG DRELVMKGVT HGACDYLVKP  120
VRIQELKNIW QHVVRRKKVD SKDQTNSGNQ DKSHIGNCGG GMANSDQNVK LNKKRKDQNE  180
DEDDNRDEDG YDNDDPSTQK KPRVVWSVDL HRKFVAAVNK LGIDKAVPKK ILDLMNEDKL  240
TRENVASHLQ KFRLYLKRIS CVANQQANMM AAIGSSDSSY LRMGSFNGVR NYHALTGPGQ  300
FNNTGFRSMP LNGMIGRVNT PAGLGQHCLP SSGSIKLGHG QHPSNSILDQ GLFPGNRNGS  360
MFQGNLELDQ RHSKGATSVR DLSAGINGTP VYPIPGGLSD AKLIVSRSSD AVGLTDDLIL  420
RHPRDFEGGR EYVNQSSLSV APLKSEFSAP FLDHGRLNDS WSSAAQSSAF RSNSFPSSNT  480
RDNIPVVMSS QLRNCQFDVP SINSVSSQLQ DPRTELLIQP SAISSTAEQI IDSDPTQGWV  540
WMDHKQDSPY HHSDAISSSM NSLMPANIPV AFDQNLDSKG TTLQRNMDFN SIGQSNFLDP  600
LHIKFDEVER SVEASMNLKP GECNDKSAGK EMRRHQWEGD FNMRSGKIQN VVFFAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135176RRKKVDSKDQTNSGNQDKSHIGNCGGGMANSDQNVKLNKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-120ARR-B family protein