PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002895.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 282aa    MW: 30740.8 Da    PI: 7.127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002895.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023107129123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C + F ++  L  H++ H
  Rmu_sc0002895.1_g000012.1 107 FSCNYCQRKFYSSQALGGHQNAH 129
                                89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MEPTRNVVST PEAPPSPNTP LQDPNESKKK LVILEDQDEE EIEEVNRPNT VLLLDLELSN  60
TSKDSTSNSS GFNPELNLID SLQMGGSSSE TDQSSPGDQG AAEPRVFSCN YCQRKFYSSQ  120
ALGGHQNAHK RERTLAKRGQ RQLMASTAAA AGFGGYPYFH HHNHPYFSSM ASLPLHGAYN  180
NKSLDIQVHS MIHKPSGSGS GIGFGSSYGN RGHKSSRPIF DQQPAIGKLA PQNFQTTSSS  240
RGSSTSSVGR FDMANVGWLE NGSRFRSGQH EEMKNLDLSL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.13e-38C2H2 family protein