PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002897.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 200aa    MW: 22230.6 Da    PI: 4.7624
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002897.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.11.7e-143998356
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                               +R+t+t++ql++L+ l++    ryp+ e+++++  +l    ++++++V++WFq  + +ek
  Rmu_sc0002897.1_g000004.1 39 NRWTPTPDQLRILKVLYYDkdLRYPTPEQIQDICLHLkqygQIEDKNVFFWFQKLKVREK 98
                               7****************96579*********************************99999 PP
2Wus_type_Homeobox85.94.3e-2837100264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp+Q++iL+ ly+ + lr P+ e+iq+i  +L++yG+iedkNVf+WFQ  k Re++k
  Rmu_sc0002897.1_g000004.1  37 TNNRWTPTPDQLRILKVLYYdKDLRYPTPEQIQDICLHLKQYGQIEDKNVFFWFQKLKVREKEK 100
                                689***************98799***************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MEPRTLQLME LQTQQPTEEG GSNQAAGSSA NTPIRQTNNR WTPTPDQLRI LKVLYYDKDL  60
RYPTPEQIQD ICLHLKQYGQ IEDKNVFFWF QKLKVREKEK MRLIQNVRVG GSLDVNFGST  120
SSTDDGGGQT FMEQRGGDHQ EIETLPLFPV HGEDVLGNPK TTSEEGSTYG YYSGGSGGYN  180
SGSHVSLELS LNPSGAVDLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-24WOX family protein