PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002970.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 396aa MW: 42781.6 Da PI: 8.8202

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002970.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.7e-16	218	263	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq Rmu_sc0002970.1_g000013.1 218 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 263 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MSQCVPSWDL DDSSPPPRLE SIVNQATCTL PRFSKPPFDN TITSATGGGA NKVVTWFDHH 60 CRVATSGAPS NTMTMDALVP CRNNQPDEPN SSLMIDSVDT VPGVPGSSGT GVINGRPTRV 120 GSCSATATHN EDTRRLGKHK AGVARVPATP ECRSPSVSGS ATFGMDSQQA TLDTKGSDRD 180 SVCHSRPQRE ESDEEERKKR STGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV 240 PNSSKTDKAS MLDEVIEYLK QLQAQVHVIS RMNMPAMMLP MAMQQQLQMS MMAPRNMGMG 300 IGMGMGMGMD MNNIGRPNIG GVPPVLHPTA FMPMASWDGS ACGAERLQAA STTVMPDPLP 360 AFLACQSQPM TMDAYSMMAA MYQQFHQQPA ASSSKS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MSQCVPSWDL DDSSPPPRLE SIVNQATCTL PRFSKPPFDN TITSATGGGA NKVVTWFDHH  60
CRVATSGAPS NTMTMDALVP CRNNQPDEPN SSLMIDSVDT VPGVPGSSGT GVINGRPTRV  120
GSCSATATHN EDTRRLGKHK AGVARVPATP ECRSPSVSGS ATFGMDSQQA TLDTKGSDRD  180
SVCHSRPQRE ESDEEERKKR STGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV  240
PNSSKTDKAS MLDEVIEYLK QLQAQVHVIS RMNMPAMMLP MAMQQQLQMS MMAPRNMGMG  300
IGMGMGMGMD MNNIGRPNIG GVPPVLHPTA FMPMASWDGS ACGAERLQAA STTVMPDPLP  360
AFLACQSQPM TMDAYSMMAA MYQQFHQQPA ASSSKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	ERKRRD
2	223	228	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-59	bHLH family protein