PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002988.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 318aa MW: 36434.8 Da PI: 5.6547

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002988.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	45.8	1.9e-14	13	144	6	128
NAM 6 rFhPtdeelvveyLkkkvegkk.leleevikevdiykv...ePwdLpk..kvka....eekewyfFskrdkkyatgkrknr.at 78 FhPtd++lv +yL +++++ + + +++++e++iy + Pwd+ + + a +++ +yfFs+ +k + + +r Rmu_sc0002988.1_g000003.1 13 TFHPTDSDLVGFYLYNRIKSPTpIGGKQTFPEIEIYGTtglAPWDIWRiyE--AskfpHQDYIYFFSSVKKLGS--RCFRRiGC 92 5****************9987666666888887765444874222..222334446688888766533..34445456 PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128 + g+W++t + k v+++ +e g + + + ++r++ +++ W+m+e+++ Rmu_sc0002988.1_g000003.1 93 DGGTWSETESAKLVHVNgIEEPYGKLRKFRYKNNRDRGcEHHAAWLMDEFTI 144 79********997445668999999999765544146899****86 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSLEELDVGV VKTFHPTDSD LVGFYLYNRI KSPTPIGGKQ TFPEIEIYGT TGLAPWDIWR 60 IYEASKFPHQ DYIYFFSSVK KLGSRCFRRI GCDGGTWSET ESAKLVHVNG IEEPYGKLRK 120 FRYKNNRDRG CEHHAAWLMD EFTINQAPDL ALCRLKLNEK GGARKKRKKS SDETNEDENH 180 GKIMSFKNRK LEPKRVQVQN NMCEQQKGSA SFSTTSTTQQ LPPQCDDHDY CVDENLVFSP 240 TGLVDDYHDI LNSDQFMASL DQWYEEQLQQ SSDSSLLVPQ QQVEPNISCK EQQQQQDEQK 300 LPPSPLLFTS SSSVVVLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	8e-08	NAC family protein