PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003046.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 552aa    MW: 60939.9 Da    PI: 5.6577
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003046.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.84.9e-801585442374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svse...lykal.ppsetseknsseelaa 80 
                                ++lL  cA a++ g+l+++q+lL  l+elas +gd+++Rlaa+ ++AL ++l++ s+s+    ++++ p+ + s+++     + 
  Rmu_sc0003046.1_g000006.1 158 EQLLNPCASAITGGNLTRVQHLLYVLHELASLTGDANHRLAAHGLRALTHHLSSnSSSSapnASASVgPVVTFSSTEPRFFQK- 240
                                689*************************************************9932222000233332333333333333333. PP

                       GRAS  81 lkl...fsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg... 153
                                      f+evsP++ f + +aN+ Il+ ++ e    +++Hi+D+++s+G+QWp+Ll+aL+ Rp ++pp ++iT++++ + +   
  Rmu_sc0003046.1_g000006.1 241 --SllkFYEVSPWFAFPNNIANSSILQVLADEpnraSTLHIVDIGVSHGMQWPTLLEALTRRPgGPPPLVKITVIAPFTVEndq 322
                                ..3466***********************9999888899************************55566*******986655666 PP

                       GRAS 154 .......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLkl 230
                                             +   rL  fA+++++++++n l  + l++l+ + ++ +++E+l+V+l+++lh+l +++ + e   +e+L++
  Rmu_sc0003046.1_g000006.1 323 nseapfsIGPPGDNFSARLLGFAKSMNINLQINRLDNQPLQTLNSQVIDASSDETLIVCLQFRLHQLNHNTPPNER--TEFLNV 404
                                6666666666778999******************9999*****************************966666555..****** PP

                       GRAS 231 vkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                                +++++Pk v+++e+++++  ns ++F+++f++ +ey + ++ds++a +    + r + Er++++ e+ ++++++g++    +e 
  Rmu_sc0003046.1_g000006.1 405 LRNMEPKGVILSENNMECscNScGDFATGFSRQVEYLWRFLDSTSAAF----KGRESEERRVMEGEAAKALTNRGEM----NEG 480
                                **************97764354259*******************8876....7777777777888899999999998....9** PP

                       GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +ekW er++e+GF    ++e+a +  ++llrk++ ++++rv+e++g++ l Wk++p+ ++S W+
  Rmu_sc0003046.1_g000006.1 481 KEKWCERMKEVGFVGEVFGEDAIDGGRALLRKYDsNWEMRVDEKDGCAGLWWKGQPVSFCSLWK 544
                                **********************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MTTNEVPQPN PTSEQILDWL EDSVSFFPSF LDDPYQSNGY QWWDETQDLI HANTNSVANN  60
ANIAVAENPV SPVTQLPSSD SSKKRKSPDG PVSETSSHID RKAKTERPVN KAENDVKKAS  120
DEVATPPVKR ANGNKKGTGK GTGNNCNNGN SKEGRWAEQL LNPCASAITG GNLTRVQHLL  180
YVLHELASLT GDANHRLAAH GLRALTHHLS SNSSSSAPNA SASVGPVVTF SSTEPRFFQK  240
SLLKFYEVSP WFAFPNNIAN SSILQVLADE PNRASTLHIV DIGVSHGMQW PTLLEALTRR  300
PGGPPPLVKI TVIAPFTVEN DQNSEAPFSI GPPGDNFSAR LLGFAKSMNI NLQINRLDNQ  360
PLQTLNSQVI DASSDETLIV CLQFRLHQLN HNTPPNERTE FLNVLRNMEP KGVILSENNM  420
ECSCNSCGDF ATGFSRQVEY LWRFLDSTSA AFKGRESEER RVMEGEAAKA LTNRGEMNEG  480
KEKWCERMKE VGFVGEVFGE DAIDGGRALL RKYDSNWEMR VDEKDGCAGL WWKGQPVSFC  540
SLWKNGYQVS YD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-166GRAS family protein