PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003047.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 235aa    MW: 27607.6 Da    PI: 9.8501
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003047.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.15.7e-0822744790
                       FAR1 47 k...tekerr.....traetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                               +   ++k+rr      r  tr++C a ++v   k ++ ++vt+++ eHnH+la
  Rmu_sc0003047.1_g000010.1 22 NigdAKKSRRnmipwGRRYTRVNCPAAFNVLYCKdSQLYKVTSFVREHNHDLA 74
                               2443222222244447899***********9999899**************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MSRIKPRKEN GVEKDRTPKK QNIGDAKKSR RNMIPWGRRY TRVNCPAAFN VLYCKDSQLY  60
KVTSFVREHN HDLAMDHELQ FLRANRKVEE RPVKQVENLR RAKIYTSAAY EHLVEQAGGY  120
EFVGFLTKDL YNILNRKRRK EQVDGDAQAA LTWMNIRGME SGQFWYKHIT NEEGRLANLF  180
WRDEQSLLDY NAYGEMLVMD STYKTNLYGK LLVVFVGCNN HRAIVVFGFA LILDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141RKRRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-29FAR1 family protein