PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003058.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 510aa    MW: 55927.1 Da    PI: 5.3126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003058.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.31e-1051225011374
                       GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...ssee 77 
                                lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +  + + +k l  + +++++    +++
  Rmu_sc0003058.1_g000004.1 122 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGaGGVSHSKHLFGNGSHREHghhPTDV 205
                                68**********997776669***********9987769*****************9953334444443333333334569999 PP

                       GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skee 157
                                +aa++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QWp+L+qaL sR++gpp  +lRiT++++  sg  s  +
  Rmu_sc0003058.1_g000004.1 206 MAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWPSLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGT 289
                                ***********************************************************776556*********888898999* PP

                       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                ++etg+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++
  Rmu_sc0003058.1_g000004.1 290 VQETGRRLTAFATSIGQPFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTL 370
                                ***********************9999*****************************966665555...9*************** PP

                       GRAS 242 veqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                ve+e+   +++ F++rf+++l++ysa++dslea++p +s++r  vEr++lg++i   +a   ++     e   +W e+l++ GF
  Rmu_sc0003058.1_g000004.1 371 VEEEVRPaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQSRARELVERVFLGPRIAGSLARIYRA---HGEVGCSWWEWLGAIGF 451
                                *****999******************************************************99...677788*********** PP

                       GRAS 325 kpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                kp+p+s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Rmu_sc0003058.1_g000004.1 452 KPMPISFANHCQAKLLLGLFN-DGYRVEEVaNHRLVLGWKSRSLLSASIWT 501
                                *********************.******86488899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MTELLMLSSA MELELDLSGC STETTSTTNT AISPDQWYDW SPVVDWESLA PIDQLAGGGD  60
FHELIESMME GRDGGEMDSP SSETIEEASN SCYTTTSSQS TDVTMLEEGV ASNGEDSKGL  120
RLVHLLMAAA EALTGANKSR DLARVILVRL KELVSPTDGT NMERLAAYFT EALQGLLEGA  180
GGVSHSKHLF GNGSHREHGH HPTDVMAAFQ LLQDMSPYVK FGHFTANQAI LEAVAHDRRV  240
HIVDYDIMEG IQWPSLMQAL VSRKDGPPTP HLRITALSRG GSGRRSIGTV QETGRRLTAF  300
ATSIGQPFSF HQCRLDSDET FRPSALKLVK GEALVINCML NLPHFSYRSP DSIASFLSGA  360
KTLNPRLVTL VEEEVRPAGD GGFVARFMDS LYHYSAVYDS LEAGFPMQSR ARELVERVFL  420
GPRIAGSLAR IYRAHGEVGC SWWEWLGAIG FKPMPISFAN HCQAKLLLGL FNDGYRVEEV  480
ANHRLVLGWK SRSLLSASIW TSPPQSDFAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein