PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003147.1_g000006.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 217aa    MW: 25456.2 Da    PI: 10.6105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003147.1_g000006.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-16552148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd+ll +++ ++G g+W++++   g++R++k+c+ rw++yl
  Rmu_sc0003147.1_g000006.1  5 KGSWTKEEDQLLRNYIDKHGEGRWHKVPFQAGLNRCRKSCRMRWLNYL 52
                               799*******************************************97 PP
2Myb_DNA-binding37.65.3e-125899144
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                               rg + ++E +l +++ k+lG++ W++Iar+++ gRt +++k++w
  Rmu_sc0003147.1_g000006.1 58 RGDFAEDEVDLMIRLRKLLGNR-WSLIARRLP-GRTSNDVKNYW 99
                               6788899***************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MEVRKGSWTK EEDQLLRNYI DKHGEGRWHK VPFQAGLNRC RKSCRMRWLN YLKPNIKRGD  60
FAEDEVDLMI RLRKLLGNRW SLIARRLPGR TSNDVKNYWS ARRRRDIDFG IMKNKKPPKI  120
TKNTVIRPRP RIFTKSLHYL SARPATSKPI ELAGNSSSSI SPPIQNEVDE WKTLLEGDVL  180
TNFWVEDLAS ISSIGVNSTE QGFEMDLWQF LQEEARQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-56MYB family protein