PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003165.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 447aa    MW: 49903 Da    PI: 10.003
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003165.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.61.7e-45942462136
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ss 67 
                                 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k aikel +                   s 
  Rmu_sc0003165.1_g000002.1  94 SGKKDRHSKICTAQGPRDRRMRLSVQIARKFFDLQDMLGFDKASKTIDWLFTKSKSAIKELKQHvvlpscsistigtakhinS- 176
                                68**************************************************************9988877776654433321. PP

                        TCP  68 ssasec....eaesssssasnsssg.............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                          e++           +              +++ +  +++++k++     + k sr  arararertrekmri++
  Rmu_sc0003165.1_g000002.1 177 -----LststESN-----------EvvsktmqthcalkGESSISRMNRDPKKNTRRLCLVGKGSRDGARARARERTREKMRIRS 244
                                .....11111111...........122222334455643344444555666666666777889*******************98 PP

                        TCP 135 kl 136
                                + 
  Rmu_sc0003165.1_g000002.1 245 SC 246
                                75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    
MYPLLGNNTT TNDENSSSQP HHPHLYDYNS PFLQDHDGVV LSYLLSQQQF LMIDTNSSQS  60
AEISVAASNE GLTEEKIHSS KKKKKAAAPR KRSSGKKDRH SKICTAQGPR DRRMRLSVQI  120
ARKFFDLQDM LGFDKASKTI DWLFTKSKSA IKELKQHVVL PSCSISTIGT AKHINSLSTS  180
TESNEVVSKT MQTHCALKGE SSISRMNRDP KKNTRRLCLV GKGSRDGARA RARERTREKM  240
RIRSSCQTSQ DEANPKDLGL CFGEEAEKHI NRELLEQGGT NSMMKSNADD HKTLMGRSIS  300
ALRSRPSFED EGGEFPGFTG NWATKMQSFH RKMTTNVIKS FTGNNVLQVE NPSTPMMGIT  360
TKQQEPSSTT NSLLSFKSSN SQEQKYSGTS ISVTPIPKPN AQELLNPCSI NFMPNQDQDH  420
HDHNPNSIFI TTSISQDQNP GPFLKFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-31TCP family protein