PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003200.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 131aa    MW: 15063.5 Da    PI: 9.9885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003200.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.88.8e-11191102102
                                HHHHHHHHHC..TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
               HSF_DNA-bind   2 Flkklyeile..deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                F+++ly +l   ++++++ ++ws+++n f v+  + ++  + p +F  + ++ F +QL +YgF    d +         w++++
  Rmu_sc0003200.1_g000001.1  19 FIRQLYILLCtnQKSVSDALRWSADENRFGVVSDKCLKA-IFPLHFPGTAYSNFDKQLVLYGFVA--DGR--------WWKHEE 91 
                                99****9986558899*******999***********99.***********************53..222........488888 PP

                                SXXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                                + F+k+  ell +ik ++ 
  Rmu_sc0003200.1_g000001.1  92 NLFRKDFPELLVHIKPRSM 110
                                8899999999999998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
TNMFSLVVDY SLPSGVVPFI RQLYILLCTN QKSVSDALRW SADENRFGVV SDKCLKAIFP  60
LHFPGTAYSN FDKQLVLYGF VADGRWWKHE ENLFRKDFPE LLVHIKPRSM SNLFTNSHLK  120
IALQPTKKRG G