PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003227.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

M-type_MADS

Protein Properties

Length: 740aa MW: 81433.8 Da PI: 4.5671

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003227.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.4	1.6e-12	568	603	16	51
HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklyeyss 51 R +++KK eEL +LC+a+vav+i++ +g ++++++ Rmu_sc0003227.1_g000012.1 568 RSLTLFKKGEELATLCNAQVAVLIYGFNGSVQTWPN 603 6679******************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MALQTAIPPV IPSAQVVANA FIAQYYHILH HNPGHVYRFY QDSSVMSRPD FDGVMRSVTT 60 MQGINEKILS FDYKEYKAEI ETADAQNSYK DGVTVLVTGC LTSKDNLKRK FAQSFFLAPQ 120 ENGFFVLNDV FRYVEDGELL KNHSVNNDAT TVHFNQEPEP THVLDPPTPD LETTQVEEDQ 180 FVIEKAFDTS DQDRQSANEK ESDTERPSYS NGNDVHVAVE STSTTAQEDG PKQSYASIVK 240 VAKGSPGPNK VYVPTNTVKV APKKTENSLP APAASASVPE ASAPTSTSTL EGSETNEEVE 300 GYSIYIRNLP LSVTADQLEV EFKKFGPIKE GGIQVRNKKL QGYCFGFVEF LSLSSMNSAI 360 QASPITVGGR QAIIEIKRTN TRIGSSGSGS FTSGRGGFRG DSFRGHGLNS QVEAGVELGV 420 AEKVIDQGEE TVINKVEERV INKGEETVIT KVEETVINKG EETVINMGEE KFINKGEETV 480 IIKGEETVIS KGEEEVAVQV DQSILRQIKF RSDQLSDLSW EKTACLVSLT MAECKSPARS 540 VTQEQVRKPK LAGKVKKQKI GPKLIEGRSL TLFKKGEELA TLCNAQVAVL IYGFNGSVQT 600 WPNNSNTVKD ILLQYKHAAG LDDHTGYKLR DEEFWKLPQE SLMGLTGNFL ESKEQNSDET 660 INLIEVSSQP IEGSKAIDHP DINSNCNSPI ELAENIWEDP MSEDFDKGQT LFTDSICPWQ 720 ACEYTGFDSG IETSTSDSLV

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MALQTAIPPV IPSAQVVANA FIAQYYHILH HNPGHVYRFY QDSSVMSRPD FDGVMRSVTT  60
MQGINEKILS FDYKEYKAEI ETADAQNSYK DGVTVLVTGC LTSKDNLKRK FAQSFFLAPQ  120
ENGFFVLNDV FRYVEDGELL KNHSVNNDAT TVHFNQEPEP THVLDPPTPD LETTQVEEDQ  180
FVIEKAFDTS DQDRQSANEK ESDTERPSYS NGNDVHVAVE STSTTAQEDG PKQSYASIVK  240
VAKGSPGPNK VYVPTNTVKV APKKTENSLP APAASASVPE ASAPTSTSTL EGSETNEEVE  300
GYSIYIRNLP LSVTADQLEV EFKKFGPIKE GGIQVRNKKL QGYCFGFVEF LSLSSMNSAI  360
QASPITVGGR QAIIEIKRTN TRIGSSGSGS FTSGRGGFRG DSFRGHGLNS QVEAGVELGV  420
AEKVIDQGEE TVINKVEERV INKGEETVIT KVEETVINKG EETVINMGEE KFINKGEETV  480
IIKGEETVIS KGEEEVAVQV DQSILRQIKF RSDQLSDLSW EKTACLVSLT MAECKSPARS  540
VTQEQVRKPK LAGKVKKQKI GPKLIEGRSL TLFKKGEELA TLCNAQVAVL IYGFNGSVQT  600
WPNNSNTVKD ILLQYKHAAG LDDHTGYKLR DEEFWKLPQE SLMGLTGNFL ESKEQNSDET  660
INLIEVSSQP IEGSKAIDHP DINSNCNSPI ELAENIWEDP MSEDFDKGQT LFTDSICPWQ  720
ACEYTGFDSG IETSTSDSLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02235.1	1e-10	M-type_MADS family protein