PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003245.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 250aa    MW: 27342.7 Da    PI: 9.8872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003245.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-1370114147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Rmu_sc0003245.1_g000004.1  70 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 114
                                789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MVSVNPNPAP QGFYLFDPTN MGLPGLNSVP PPTTPSTTTT TTSSAPQNAA SLAEDLSKKI  60
RKPYTITKSR ESWTEQEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK  120
KGTSEHVPPP RPKRKATHPY PQKAPKSAPV ASQVVVPFES SSALLEHGYA YQPDSSFVLG  180
TPVTSASLSS WSHSYVPPVN ASQVTKDDGK LAGSTDAQNS CYSSSNESKP TTWLMGETVG  240
RACHRQPQRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-69MYB_related family protein