PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003275.1_g000065.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

YABBY

Protein Properties

Length: 186aa MW: 20722.5 Da PI: 8.4131

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003275.1_g000065.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	219.5	1e-67	6	160	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 + +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l++++ ++++++ ++ ++s + Rmu_sc0003275.1_g000065.1 6 DAVPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSCQDV--------QAQNQNAQNYRIDSGSS 81 5679**********************************************9999995........44555555555555544 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +++ ++ ++ +++++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Rmu_sc0003275.1_g000065.1 82 SKGNKKIATRD-SIAV---HHATEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 160 44444444333.2233...333344469***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MSSCIDAVPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSLS 60 CQDVQAQNQN AQNYRIDSGS SSKGNKKIAT RDSIAVHHAT EERGVNRPPE KRQRVPSAYN 120 QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLETNNQAKL DNGSEKHLLS 180 RAALLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	2e-87	YABBY family protein