PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003351.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 354aa MW: 38764.1 Da PI: 7.3402

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003351.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.6	2.4e-23	6	83	54	128
NAM 54 eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskkgelvglkktLvfykgrapkg.ektdWvmheyrl 128 ee+ +yfFs+rd+ky++gk ++r+t +g Wkatgkd e++s++ +++g +ktLvfy+ ++++g +kt+W+mhey++ Rmu_sc0003351.1_g000008.1 6 EEEAMYFFSPRDRKYPNGKLPSRITGegDGLWKATGKDLEIFSQRWKVIGARKTLVFYDLKSKHGaKKTNWIMHEYTI 83 45678****************98856788***********************7765555279******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MHKFREEEAM YFFSPRDRKY PNGKLPSRIT GEGDGLWKAT GKDLEIFSQR WKVIGARKTL 60 VFYDLKSKHG AKKTNWIMHE YTIEENISPS TSTTRAPGDN RLDDWVLCKV YLSKMSKPKP 120 NTGDGGKTDM TDSEPLEQDL PVLESWSATP NLGEQVNVSN ESAQALYNGI MTVPYGSTTG 180 YVSQEVTNLG ARSLAHHQQN LSLLPSFSQL PVINSVTSAI SSLAGGDNNN GTITTPNDGS 240 NGSDKVINLQ KNLHADHQQD LPSLQNSSKP SVINSVGSAI ASLAGSPVFP DFQQVPRGFG 300 AQYGTNIAPI NGIQAHQSPH GIGRHQSRPS LNNGCLPPLP QCYYYYDDRG YSSF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MHKFREEEAM YFFSPRDRKY PNGKLPSRIT GEGDGLWKAT GKDLEIFSQR WKVIGARKTL  60
VFYDLKSKHG AKKTNWIMHE YTIEENISPS TSTTRAPGDN RLDDWVLCKV YLSKMSKPKP  120
NTGDGGKTDM TDSEPLEQDL PVLESWSATP NLGEQVNVSN ESAQALYNGI MTVPYGSTTG  180
YVSQEVTNLG ARSLAHHQQN LSLLPSFSQL PVINSVTSAI SSLAGGDNNN GTITTPNDGS  240
NGSDKVINLQ KNLHADHQQD LPSLQNSSKP SVINSVGSAI ASLAGSPVFP DFQQVPRGFG  300
AQYGTNIAPI NGIQAHQSPH GIGRHQSRPS LNNGCLPPLP QCYYYYDDRG YSSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	4e-27	NAC family protein