PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003383.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 291aa    MW: 32837.6 Da    PI: 5.9865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003383.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-152168148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT  Ed ll ++++ +G g+W++ a++ g++R +k+c++rw++yl
  Rmu_sc0003383.1_g000026.1 21 KGPWTLAEDTLLTNYIANHGEGHWNALAKCAGLKRKGKSCRLRWLNYL 68
                               79******************************99************97 PP
2Myb_DNA-binding45.32e-1474117146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                rg+ T +E++l+++++ ++G++ W++Ia++++ gRt+ ++k +w++
  Rmu_sc0003383.1_g000026.1  74 RGNLTSQEQLLILELHSKWGNR-WTKIAQHLP-GRTDDEIKTHWRT 117
                                7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MAGVANIVCT SPNEEENELR KGPWTLAEDT LLTNYIANHG EGHWNALAKC AGLKRKGKSC  60
RLRWLNYLKP DTKRGNLTSQ EQLLILELHS KWGNRWTKIA QHLPGRTDDE IKTHWRTRVH  120
KQVRQLNIES NSERLLDAVR CFWMPTLHQK MEQPSSLSLD PSSSLSNSQI AVAPSLSPQT  180
YSVSSSPPSK VVSHVSDYSP IGNSSPSHSS LSSDSLISQL PQIQEQPASS SHAFEALNDN  240
YYVDYDMEGF RFDPVSEMAS FDTSQFDCQT AESNWIEDNY MTDTLWSMQG M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359LKRKGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-78MYB family protein