PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003426.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 474aa MW: 53945.7 Da PI: 6.3083

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003426.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124	1.3e-38	19	146	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyat.gkrknratksg 81 lp+G+rFhPt+eelv+++Lk+k++g +++ ++evdi+k+ePwdLp+ ++++++ew++Fs+ d k+ + + ++nrat+ g Rmu_sc0003426.1_g000005.1 19 LPVGYRFHPTEEELVDHFLKNKMQGYAFDE---VPEVDICKHEPWDLPAfsPLRSDDEEWFYFSRPDYKSGKkQGQANRATEGG 99 799*********************9777...9**********4456778999*****9998626699*** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +Wk t k+ ++ ++ +++++g k++L+fy+g+ ++g+kt+W +hey Rmu_sc0003426.1_g000005.1 100 FWKITAKEGTIRARrSKAVIGKKRILTFYTGKVRSGQKTSWGIHEYY 146 ********98566679************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MAASSSRLRV GCRFDPRELP VGYRFHPTEE ELVDHFLKNK MQGYAFDEVP EVDICKHEPW 60 DLPAFSPLRS DDEEWFYFSR PDYKSGKKQG QANRATEGGF WKITAKEGTI RARRSKAVIG 120 KKRILTFYTG KVRSGQKTSW GIHEYYIPET QLPNAARQRD FVLCRLKKKD ESTNIGACDE 180 GEPSTNNASD FQNLMEVFGR QSIPEDLQIT LQENTRRPEE IFDTLFPSPE SPQLHNFSSM 240 LGDNFLHANA VSDVHLELQY GFQPDDSEDE EFNVNSYLVD DGDYSLEETS RTTRLNHSSE 300 PKSVVKVYDE GIHQQSMSSP VASSLPIRDA NVMLLKLSQK NSSPVNIAAN LPWKELQADF 360 GSHMLSHLGP QEVKYKSKLS EMPKPKPEPP RPKPEPPTPK PKPVEPPSND EGKGMKQKQT 420 GTTISDWKSS FIVWKESPLS LRSYPPAVYT CYMIGGLGLF IFFVQELISY GKWY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MAASSSRLRV GCRFDPRELP VGYRFHPTEE ELVDHFLKNK MQGYAFDEVP EVDICKHEPW  60
DLPAFSPLRS DDEEWFYFSR PDYKSGKKQG QANRATEGGF WKITAKEGTI RARRSKAVIG  120
KKRILTFYTG KVRSGQKTSW GIHEYYIPET QLPNAARQRD FVLCRLKKKD ESTNIGACDE  180
GEPSTNNASD FQNLMEVFGR QSIPEDLQIT LQENTRRPEE IFDTLFPSPE SPQLHNFSSM  240
LGDNFLHANA VSDVHLELQY GFQPDDSEDE EFNVNSYLVD DGDYSLEETS RTTRLNHSSE  300
PKSVVKVYDE GIHQQSMSSP VASSLPIRDA NVMLLKLSQK NSSPVNIAAN LPWKELQADF  360
GSHMLSHLGP QEVKYKSKLS EMPKPKPEPP RPKPEPPTPK PKPVEPPSND EGKGMKQKQT  420
GTTISDWKSS FIVWKESPLS LRSYPPAVYT CYMIGGLGLF IFFVQELISY GKWY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	1e-39	NAC family protein