PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003436.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 579aa MW: 62301.5 Da PI: 4.9626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003436.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.3e-09	364	412	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Rmu_sc0003436.1_g000014.1 364 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 412 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence
MDMSEKDKFE LENRNEEPMN YSPSMTYGFG GSNLTNASMG LVPTGNSMAD SKEDLIGSSS 60 QPSASMVESF SQALWDHPTN AQNMGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD 120 MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFSDMMNPFV 180 VPESMSLYSK GGGMMQWAVA GQGPKAMSSN ELNQVGDASN EVSLPIDHGA TDGSPLKNEK 240 KSESLVKSHD EAKNAMDGSG NESDEADFSG GAEEPSMMEG TGVGPSSKGS KKRKRGGQAN 300 ELDQTKIAAH QSIESTKDDT EMVQKGASTT NKTTGRLVKQ GSQTSDPPKE EYIHVRARRG 360 QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM 420 KLATVNPRLD LNIESLLEKD QILQSRVGPS SSMGFSPDMH IAYPPLHPSQ SGLIQAGLPG 480 MGSSSDLLRR AMGSQMAPMT GGFKEPSQLS NVWEDELQNV FQMSYRTGTP SNSQDVDGSG 540 TPGHMKALPV KFDASGLENS EKCNAEADDM LNNASYAER

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence

MDMSEKDKFE LENRNEEPMN YSPSMTYGFG GSNLTNASMG LVPTGNSMAD SKEDLIGSSS  60
QPSASMVESF SQALWDHPTN AQNMGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD  120
MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFSDMMNPFV  180
VPESMSLYSK GGGMMQWAVA GQGPKAMSSN ELNQVGDASN EVSLPIDHGA TDGSPLKNEK  240
KSESLVKSHD EAKNAMDGSG NESDEADFSG GAEEPSMMEG TGVGPSSKGS KKRKRGGQAN  300
ELDQTKIAAH QSIESTKDDT EMVQKGASTT NKTTGRLVKQ GSQTSDPPKE EYIHVRARRG  360
QATNSHSLAE RVRREKISER MKFLQDLVPG CSKVTGKAVM LDEIINYVQS LQRQVEFLSM  420
KLATVNPRLD LNIESLLEKD QILQSRVGPS SSMGFSPDMH IAYPPLHPSQ SGLIQAGLPG  480
MGSSSDLLRR AMGSQMAPMT GGFKEPSQLS NVWEDELQNV FQMSYRTGTP SNSQDVDGSG  540
TPGHMKALPV KFDASGLENS EKCNAEADDM LNNASYAER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	1e-127	bHLH family protein