PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003441.1_g000098.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family E2F/DP
Protein Properties Length: 506aa    MW: 55434.3 Da    PI: 5.1215
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003441.1_g000098.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP26.41.1e-08137172139
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedv 39 
                                r+++sL+llt+kf++l++++e+gi++ln++a++L   + 
  Rmu_sc0003441.1_g000098.1 137 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EL 172
                                6899******************************...44 PP
2E2F_TDP86.42.2e-27248313171
                    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                                r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Rmu_sc0003441.1_g000098.1 248 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 313
                                6899******************************...99..****************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MSGYRAPNPP PPQPPQRQLP FSSLKPPFSA SLDYHAFAPD RRPPPPPDHL PAEGITVKPP  60
LKRKSDTADY DEPNDRAAAP EYTDIVNSPL QTPVPVKVGK ANKASRLSKL NRAGPQTPAS  120
NVGSPSGANL TPAGPCRYDS SLGLLTKKFI NLIKHAEDGI LDLNKAADTL ELKRKSDTAD  180
YDEPNDRAAA PEYTDIVNSP LQTPVPVKVG KANKASRLSK LNRAGPQTPA SNVGSPSGAN  240
LTPAGPCRYD SSLGLLTKKF INLIKHAEDG ILDLNKAADT LEVQKRRIYD ITNVLEGIGL  300
IEKKLKNRIQ WKGLEATRTG DADENYDGLK AQVENLSTEE GRLDEQIREM QERLSNLSEE  360
ESNKKWLFVT EEDIKGLPCF QNETLIAIKA PHGTTLEVPD PDEAVDYPQR RYRMVLRSMM  420
GPIDVYLVSQ FEEKFEEING AEEPGSIPST SGLCENPAPT IVNEDTGKHV EMQGQEDHRV  480
SADPTASQDF MSGIMKIVPS DVNSIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-122E2F/DP family protein