PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003480.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 482aa MW: 53352.8 Da PI: 8.6739

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003480.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	389	438	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ Rmu_sc0003480.1_g000002.1 389 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 438 678999******************9776668************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MAPKDPKQGG GFFASIASTF SAVTKSVNGL VGYEGLEVIN PDGGTDDVHE EASKGRWKQE 60 DRDGYWKVMQ KYVGADVTSM VTLPVLIFEP MTMLQKMAEL MEYSHLLDLA DECEDPYMQL 120 VYSASFFISV YYAFQRTWKP FNPILGETYE MVNHGGITFV AEQVSHHPPM SAAHAENEHF 180 IYDITSKVKT KFLGNSIDIY PVGSIKSFKV PELFFEIPTT ATVGSLKRTV MEAVTSILGE 240 GLHVGILVQG KKVRDDSKTL LQTGISHDDK LDNLGFTLEP KHSKLIYSQC GNDPSSVSGR 300 TQELTRHSAS LVSRPGTSNV SLNPPATNLG SCVDKGLNAV PSLASTSIDK TPPASQALVA 360 VPPINANPLA VVPFHRRSGH PAYVQRRMRR PFSVSEVEAL VQAVEKLGTG RWRDVKMRAF 420 DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHAYWS QRQAKQQLRA 480 AA

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MAPKDPKQGG GFFASIASTF SAVTKSVNGL VGYEGLEVIN PDGGTDDVHE EASKGRWKQE  60
DRDGYWKVMQ KYVGADVTSM VTLPVLIFEP MTMLQKMAEL MEYSHLLDLA DECEDPYMQL  120
VYSASFFISV YYAFQRTWKP FNPILGETYE MVNHGGITFV AEQVSHHPPM SAAHAENEHF  180
IYDITSKVKT KFLGNSIDIY PVGSIKSFKV PELFFEIPTT ATVGSLKRTV MEAVTSILGE  240
GLHVGILVQG KKVRDDSKTL LQTGISHDDK LDNLGFTLEP KHSKLIYSQC GNDPSSVSGR  300
TQELTRHSAS LVSRPGTSNV SLNPPATNLG SCVDKGLNAV PSLASTSIDK TPPASQALVA  360
VPPINANPLA VVPFHRRSGH PAYVQRRMRR PFSVSEVEAL VQAVEKLGTG RWRDVKMRAF  420
DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHAYWS QRQAKQQLRA  480
AA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	2e-95	MYB_related family protein