PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003480.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 767aa    MW: 86299.1 Da    PI: 6.4753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003480.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.33.6e-1183947651374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lL+++A+av+++d++ a++lL++++ ++sp gd +qRla++f+ +L+arla+++s++yk + +++t+    +++l+a++lf
  Rmu_sc0003480.1_g000003.1 394 LRSLLITVAQAVAADDHRTANELLKKVRLHSSPFGDGTQRLAHCFADGLEARLAGTGSQIYKGFVSKRTP---AADVLKAYHLF 474
                                689**************************************************************99999...9********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  ++P+ k+s+++ N++I+ + +++ r+H+iDf+i +G+QWp+L+q +a R++gpp+lRiTg++ p++g   +e +eetg+rLa
  Rmu_sc0003480.1_g000003.1 475 LAACPFTKMSNFVSNKTIMTSSQKAMRLHVIDFGIHYGFQWPTLIQRIAMREGGPPKLRITGIEFPQPGfrPAEGVEETGRRLA 558
                                ********************************************************************9*************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                 +Ae+++vpfe+n+ +ak++e+++leeL++ ++E l+Vn+ ++ ++lldesv+++s+r++vL+l+++++P+++++   +  +n+
  Rmu_sc0003480.1_g000003.1 559 AYAETFHVPFEYNA-IAKKWENITLEELKIGRDEFLVVNCLYRGKNLLDESVAVDSARNRVLNLIRRTNPDIFIHGVINGAYNA 641
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F++rf eal ++s++fd+le+ +pre++er+++E+e++gre+ nv+aceg er+er e++++W+ r  +aGF ++p++ + +
  Rmu_sc0003480.1_g000003.1 642 PFFVTRFREALFHFSSMFDMLETVVPREDRERMVIEKEIIGREALNVIACEGWERVERPESYKQWQVRNLRAGFVQIPFDRELV 725
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                kqa + ++  + + + ++e+  +l++gWk+r+++++SaW+
  Rmu_sc0003480.1_g000003.1 726 KQAARKVKSSYHKDFVIDEDGRWLLQGWKGRTIFAISAWK 765
                                ***********888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    
MTMDPRLRSF YDSLNGVRLS NRPFSILSHQ NIVPQSPFSS HPFLGSDYRE FNYPRPDLTP  60
NDLSSVSSLS HEEEDCDFSD EVLKYINQML MEEDMEDKTC MLQESLELQA AEKSFYDVLG  120
KKYPPSPEVN HDFSVPYGEI PDDGFSGNSS NYITSSSSNS GFSGNGSSCI TSSSNSGSYF  180
SDGTWIQSPG GYMSQFQGLP PYNISHSSYG SSTMVSSLDG LVESPNSSLH VPDFSTETRS  240
VWQFNKGVEE ASRFLPGETN LVVDLDVNWL SAQALKIRTD EEVVKPEKKD EGECSSCGPR  300
GRKNPYREDD EDVEENRSSK QAAVSTESTL RSEMFDKILL CSLGEGKEHL ISKREQLQNG  360
MIKSVPQKEK SKGSNGGKGR GKKQSGNKKD VVDLRSLLIT VAQAVAADDH RTANELLKKV  420
RLHSSPFGDG TQRLAHCFAD GLEARLAGTG SQIYKGFVSK RTPAADVLKA YHLFLAACPF  480
TKMSNFVSNK TIMTSSQKAM RLHVIDFGIH YGFQWPTLIQ RIAMREGGPP KLRITGIEFP  540
QPGFRPAEGV EETGRRLAAY AETFHVPFEY NAIAKKWENI TLEELKIGRD EFLVVNCLYR  600
GKNLLDESVA VDSARNRVLN LIRRTNPDIF IHGVINGAYN APFFVTRFRE ALFHFSSMFD  660
MLETVVPRED RERMVIEKEI IGREALNVIA CEGWERVERP ESYKQWQVRN LRAGFVQIPF  720
DRELVKQAAR KVKSSYHKDF VIDEDGRWLL QGWKGRTIFA ISAWKPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein