PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003503.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 222aa    MW: 25716.7 Da    PI: 8.6561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003503.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-173732098
                               HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                 f+++++g+       +l+ ++g+ W+vkl  + k +  ++ kGWk+Fvk+n L+egDf+vF +dg+s f   v++++
  Rmu_sc0003503.1_g000005.1  3 TAFVNDFNGP----ALCKLRGPNGKCWDVKL--EEKNNDLFFHKGWKKFVKDNYLEEGDFLVFNYDGNSLF--SVTIYD 73
                               5566555544....45799************..99999*****************************9988..777776 PP
2B344.52.8e-141272051296
                                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                ++ +l +p   a++ g+   +++t+ l+d+s+rsW v ++    +gr+++ kGW + +kan++k g +vvF++++   ++ +++
  Rmu_sc0003503.1_g000005.1 127 RLYQLNIPIIIARAKGLM--SKRTIELRDPSNRSWPVAVT-PMEDGRTLMNKGWCHCCKANQIKKGNTVVFEFVK---GHVKLH 204
                                456789999999999877..4569***************4.5666779************************876...333444 PP

                                E CS
                         B3  96 v 96 
                                +
  Rmu_sc0003503.1_g000005.1 205 I 205
                                4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MPTAFVNDFN GPALCKLRGP NGKCWDVKLE EKNNDLFFHK GWKKFVKDNY LEEGDFLVFN  60
YDGNSLFSVT IYDESACEMD MEEAKRKRST GGFGQMRDYV MPGETRLRLI EFKSEHLCFK  120
RTMEGHRLYQ LNIPIIIARA KGLMSKRTIE LRDPSNRSWP VAVTPMEDGR TLMNKGWCHC  180
CKANQIKKGN TVVFEFVKGH VKLHIIRDEG YEVMLTGPNI VY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-18B3 family protein