PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003610.1_g000038.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 574aa MW: 63006.1 Da PI: 7.5989

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003610.1_g000038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.3	2.7e-18	269	318	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI++Lq Rmu_sc0003610.1_g000038.1 269 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQYLQ 318 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MELPQPRPFG GEGGRKPTHD FLSLYTSHST AQQDPIPPSQ GGYLETHDFL QPLERMGMGK 60 TCAKEETSVE IISPSRSSVE KPPCVAQRPT SVEHILPGGI GTYSISHISY FNQRVPKPEE 120 NVFPVAPQAS STHERNDETS NCSSYAGSGF TLWDESAAMK GKTGKENVVE RPGLRGQWTS 180 SERPSQSSST NNRNCFSSQS SGQKNLSFME MMKSAAKGCT QEEELDDEEE FALKKEMSTS 240 TTTATTPYNG ELRVKVDVKS SDQKANTPRS KHSATEQRRR SKINDRFQML RELIPHSDQK 300 RDKASFLLEV IEYIQYLQEK VTKYEAPYQG WNHDPAKLMP WGNNKLGESY CDQSRSMNGG 360 SGPALVFAAS ASKFEEKTTS VSPTIPGSAQ NLVESDTSTE TTFRAKDYPN GITNKANPYP 420 LSMQSNFSTP VRSGSAAPHL PPRLPSDAEN TSSHPRSMLF PTKSCTADAG AISDKLKEHE 480 LTIEGGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKQACS RTAIPKSIVK 540 ENEIPSMTPG KKHPRISVGE DSEQAQKKLR TGRH

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MELPQPRPFG GEGGRKPTHD FLSLYTSHST AQQDPIPPSQ GGYLETHDFL QPLERMGMGK  60
TCAKEETSVE IISPSRSSVE KPPCVAQRPT SVEHILPGGI GTYSISHISY FNQRVPKPEE  120
NVFPVAPQAS STHERNDETS NCSSYAGSGF TLWDESAAMK GKTGKENVVE RPGLRGQWTS  180
SERPSQSSST NNRNCFSSQS SGQKNLSFME MMKSAAKGCT QEEELDDEEE FALKKEMSTS  240
TTTATTPYNG ELRVKVDVKS SDQKANTPRS KHSATEQRRR SKINDRFQML RELIPHSDQK  300
RDKASFLLEV IEYIQYLQEK VTKYEAPYQG WNHDPAKLMP WGNNKLGESY CDQSRSMNGG  360
SGPALVFAAS ASKFEEKTTS VSPTIPGSAQ NLVESDTSTE TTFRAKDYPN GITNKANPYP  420
LSMQSNFSTP VRSGSAAPHL PPRLPSDAEN TSSHPRSMLF PTKSCTADAG AISDKLKEHE  480
LTIEGGRINI SSAYSQGLLN TLTQALQNSG VDLSQASISV QIELGKQACS RTAIPKSIVK  540
ENEIPSMTPG KKHPRISVGE DSEQAQKKLR TGRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	1e-118	bHLH family protein