PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003628.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 275aa    MW: 31936.8 Da    PI: 5.4253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003628.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.12.5e-2181411128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.d.iykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrkn 75 
                                lp+G+rF Ptd+el+++yL+ +++  +   +++++++ +   + ePw   +       k  ++e+ +yfF++r++ ++t kr  
  Rmu_sc0003628.1_g000026.1   8 LPVGVRFLPTDQELLDYYLRSRIAMGDQFRTDFVADCpHfFGDKEPWVVWQiyggaesKKVEDENTLYFFTHRRRLSPTAKRFD 91 
                                799*******************9988855558899996424577***99644666654222355678***************** PP

                        NAM  76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                r++ sg+W+ + + +ev + +g + glk+ + +  g   ++++  W+m+e++l
  Rmu_sc0003628.1_g000026.1  92 RKVGSGTWSGQYS-REVED-DGVVLGLKREFRYE-GGCDESHNDGWLMQEFQL 141
                                ********98765.99999.99**********97.66666689********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MAILSNKLPV GVRFLPTDQE LLDYYLRSRI AMGDQFRTDF VADCPHFFGD KEPWVVWQIY  60
GGAESKKVED ENTLYFFTHR RRLSPTAKRF DRKVGSGTWS GQYSREVEDD GVVLGLKREF  120
RYEGGCDESH NDGWLMQEFQ LDDDSDLVLC SLRKNPRKAQ GSNTRVVNHK KRKSIPQPRK  180
PKSKRQKKEG TCHQEEGSST VHPNYELPYP QMDVHPNHEL PYPQMDDLDF DFPEIYPDLF  240
VDDGRDLFTM DQLLGQTPVW EEGNNFNLVT GVPLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172186RKSIPQPRKPKSKRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-14NAC family protein