PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003636.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 662aa    MW: 76005.3 Da    PI: 6.6206
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003636.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.82.4e-1112896602374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf+++L+arl++ ++  ++ l +++ts    +e l+a+++f 
  Rmu_sc0003636.1_g000011.1 289 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANGLEARLTGVGTPSFSPLFSRQTS---AAEILQAYEVFT 369
                                5789**************************************************999999888888888...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                  +P+ ++s+++aN++I++ + +e+r+HiiDf+is+G+QWp+L+q L++Rp+gpp+l iT+++ p++g   +e++eetg+rLa+
  Rmu_sc0003636.1_g000011.1 370 TSTPFKTISQFLANRTIMKLARNETRLHIIDFGISYGFQWPCLIQHLSNRPNGPPKLHITAIELPQPGfrPTERVEETGHRLAR 453
                                *******************************************************************9**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +++++ vpfe+nv +ak++e+++ e+L+++++E ++Vn+ ++l++++de+v  +s+rd+vLkl+k+++P+++++  ++  hn++
  Rmu_sc0003636.1_g000011.1 454 YCAKFSVPFEYNV-IAKKWETIQCEDLKLDKKELVVVNCLHRLKHIHDETVMENSPRDAVLKLIKNINPNLFIHGISNGTHNTP 536
                                ************9.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf eal +y a+fd +ea+ p+e++  +++E+ + gr+i+n++aceg er+er et++kW+ r  +aG+k++pl+ +  k
  Rmu_sc0003636.1_g000011.1 537 FFATRFREALLHYYAVFDVFEATNPHEENRWMMLEKDFHGRDIMNIIACEGVERVERPETYKKWQIRNVRAGLKQLPLDRELLK 620
                                ***********************9************************************************************ PP

                       GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +ak l + ++  + +r++e+ ++++ gWk+r ++++S+W+
  Rmu_sc0003636.1_g000011.1 621 KAKKLSELMGyHNDFRLDEDGHWMLHGWKGRIITALSFWK 660
                                ********999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    
MDTFFDRVSG PTERFKFGHA STSVTSNPNL DNRFQINQES TDTLCHPSDS ATSLSPDSEE  60
ETFDINYFNN PMLKYISDIL LDEELEGKNC MLQDSLSLQA AEKSFYDVLN PKDPPPPNQL  120
PLPVYQNFEH SDDDSTHMLH QSSLVVSFSD TLLVSDSHFK KQSLGNFEQA GEANKFLTNG  180
NFGFINEERY QTNGLKGKKN HQRDDENYPE EGRNSKQSVV SADDSEPQEM FDKVLLCQGD  240
HHQEWESCTP HCSMKREGTE QLQHNKQSKG SKTNRSKRQN KDEEGVDLTT MLNQCAQAVA  300
SYEQGTASEL LKKIRQHSSP HGHATQRLAH YFANGLEARL TGVGTPSFSP LFSRQTSAAE  360
ILQAYEVFTT STPFKTISQF LANRTIMKLA RNETRLHIID FGISYGFQWP CLIQHLSNRP  420
NGPPKLHITA IELPQPGFRP TERVEETGHR LARYCAKFSV PFEYNVIAKK WETIQCEDLK  480
LDKKELVVVN CLHRLKHIHD ETVMENSPRD AVLKLIKNIN PNLFIHGISN GTHNTPFFAT  540
RFREALLHYY AVFDVFEATN PHEENRWMML EKDFHGRDIM NIIACEGVER VERPETYKKW  600
QIRNVRAGLK QLPLDRELLK KAKKLSELMG YHNDFRLDED GHWMLHGWKG RIITALSFWK  660
PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-171GRAS family protein