PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003636.1_g000012.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 571aa    MW: 65519.8 Da    PI: 6.9319
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003636.1_g000012.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.87.1e-752364982270
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA+  +s d + a++ L+++++++sp+gd +qR+a+y++++L+++la      + +++p   ++++ ++ l+a++++ 
  Rmu_sc0003636.1_g000012.1 236 QSLLTQCAK--ASYDRRTANEQLKQIRQHSSPYGDGTQRVAHYLANGLEEHLAA----AVPSFNPLCLNKMSAADILKAYQTYI 313
                                579******..67899*************************************9....556677778888889*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                +++P+  +s++ aN++I + +e+++r+HiiDf+i +G QWp L+q+La+Rp+gpp+lRiTg++ p+sg   +e+leetg+ Lak
  Rmu_sc0003636.1_g000012.1 314 KACPFKLMSNIYANKTIFKLTEKATRLHIIDFGILYGYQWPGLIQSLAKRPSGPPMLRITGIEFPQSGfrPSESLEETGHLLAK 397
                                *******************************************************************9**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                ++++++vpfe+n+ +a+++e++++++++++++E ++Vn+  +l +++ e+++++s+rd+vLkl+++++P++ ++   +  +n++
  Rmu_sc0003636.1_g000012.1 398 YCKRFNVPFEYNF-IAQDWETIRYQDIKLDRDELTVVNCLCRLRNVP-EETEMRSPRDRVLKLIRRINPDMYILGLVNGTYNAP 479
                                *************.7*******************************9.78888899**************************** PP

                       GRAS 252 sFlerflealeyysalfds 270
                                 F  rf eal+++s+lfd+
  Rmu_sc0003636.1_g000012.1 480 FFNIRFREALYHFSSLFDM 498
                                ******************8 PP
2GRAS47.82.6e-15498568304374
                       GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +r er et+++W+ r ++aGFk++p ++++ +++k ++r  + + + v+e+ +++++gWk+r L+++S+W+
  Rmu_sc0003636.1_g000012.1 498 MRLERPETYKQWQIRNTRAGFKQLPSNQEILTEVKNMVRLDYREDFVVDEDGKWILQGWKGRILYAFSCWK 568
                                689***************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    
MPTSPDQNII FTEFDQHNLE ITDPSSFLSN PNPPPRDVSS RSLGVTSEAS RATPQYISEM  60
LMEEELENRP CMLQDCLALQ AAEKSLEDVL VQQYPPSTNP ILASSIQQNV DNSDDFINHS  120
SNSSTAARNW VDGSGWISFQ NDHNDSTKGS RSKKDRHWED GDCLEEGRSN KQSSFYADES  180
EPPDMLDKVL LFHYQNPKSD SCSSFQLKGG RGHAGSKGKR TVKKKKDDNT EVVDFQSLLT  240
QCAKASYDRR TANEQLKQIR QHSSPYGDGT QRVAHYLANG LEEHLAAAVP SFNPLCLNKM  300
SAADILKAYQ TYIKACPFKL MSNIYANKTI FKLTEKATRL HIIDFGILYG YQWPGLIQSL  360
AKRPSGPPML RITGIEFPQS GFRPSESLEE TGHLLAKYCK RFNVPFEYNF IAQDWETIRY  420
QDIKLDRDEL TVVNCLCRLR NVPEETEMRS PRDRVLKLIR RINPDMYILG LVNGTYNAPF  480
FNIRFREALY HFSSLFDMRL ERPETYKQWQ IRNTRAGFKQ LPSNQEILTE VKNMVRLDYR  540
EDFVVDEDGK WILQGWKGRI LYAFSCWKPA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227KRTVKKKKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-153GRAS family protein