PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003639.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 331aa    MW: 36572.9 Da    PI: 6.2504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003639.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WTteEd++lvd+++  G g+W++ ++  g++R++k+c++rw +yl
  Rmu_sc0003639.1_g000007.1 15 KGPWTTEEDQKLVDYINTNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                               79********************************************97 PP
2Myb_DNA-binding51.81.9e-1668113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++++eE+  ++++++  G++ W++Ia +++ gRt++++k++w+++l
  Rmu_sc0003639.1_g000007.1  68 RGKFSEEEERVIINLHAVVGNK-WSKIATHLP-GRTDNEIKNFWNTHL 113
                                89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MGRSPCCDDQ SGLKKGPWTT EEDQKLVDYI NTNGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERVII NLHAVVGNKW SKIATHLPGR TDNEIKNFWN THLRKKLLQM  120
GLDPNTHKPR TDLNHLLNLS QLLSTANIGN MMTSTPWDNA LRLQASAAQL AKMQLLQNLY  180
MQVINSSVAP DIDNKTSTGL FGSQNINLFG GNFSGASTMV GGQEWNPDSI PGAPNELNTI  240
SNSLEGFEGL NSNINTNLMS SCYDIQSFKS QFAELVSASS PGSSTNNNQI ESTSTGDIPA  300
AGQSSPTSIF EAWEKLMDDD TSESYWKDIL Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.14e-85MYB family protein