PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003692.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 333aa    MW: 37062.6 Da    PI: 8.0558
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003692.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-17169229357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+el++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0003692.1_g000017.1 169 NRWTPTPAQLRILQELYYDkvLKYPTPEQIQEICLHLqqygQIEDKNVFFWFQNLKARERQ 229
                                8****************96679*************************************97 PP
2Wus_type_Homeobox94.59.1e-31167230264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ely+ + l+ P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerqk
  Rmu_sc0003692.1_g000017.1 167 TSNRWTPTPAQLRILQELYYdKVLKYPTPEQIQEICLHLQQYGQIEDKNVFFWFQNLKARERQK 230
                                689***************99688999*************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MNFAKTISEI RPIGPPPTAT VRTLIRGKPK YGPPATAYPF CDLRKSESLS AKAVCHSASR  60
FARSPYALST RQQLFRPFFR SSNPFFINFT PSPPDLLFHQ EDSISSFIRK IRSPPQLPQL  120
INMEPRTLQL MELQTQQQME LQAQQLTEEG GSTQAAGSSA NTPIRPTSNR WTPTPAQLRI  180
LQELYYDKVL KYPTPEQIQE ICLHLQQYGQ IEDKNVFFWF QNLKARERQK LKEFQNVRVG  240
GSLDLNFGST SSTDDGRSID LNFGFTGSTG DHQEVETLPL FPMHGENVLG NPKTTSEEGS  300
AYGYYSGGSG GYNSGSPVSL ELSLNPSGAA DLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-24WOX family protein