PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003693.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 424aa MW: 47921.9 Da PI: 4.593

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003693.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.6	1.5e-37	8	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 +ppG+ FhPtde l+++ L++k + k+ e++++i+e+d++k+eP++Lp++ + ++ +wyfF++r+ ky+++kr+nr+t++g+Wk Rmu_sc0003693.1_g000003.1 8 VPPGYGFHPTDEKLLSD-LEEKNQCKDSEITTIIPEIDVCKHEPHELPESWD-SQGKWYFFTPREYKYPNSKRSNRTTREGFWK 89 59***********66.9****9999*************6554.4679*********************** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tgkd+++++ +++++ ++tL+fyk +k++kt Wv+hey l Rmu_sc0003693.1_g000003.1 90 ITGKDRDIKALrSKAVIERRRTLTFYKRGVSKSQKTGWVIHEYYL 134 ****987466678999**9999999********76 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MSCGGFTVPP GYGFHPTDEK LLSDLEEKNQ CKDSEITTII PEIDVCKHEP HELPESWDSQ 60 GKWYFFTPRE YKYPNSKRSN RTTREGFWKI TGKDRDIKAL RSKAVIERRR TLTFYKRGVS 120 KSQKTGWVIH EYYLIQAHSD PPKQIGDFVV CCLKYKSDNS DHDKDAPFFD RGSTSCSMAS 180 NVENQAEENW ASIKQVNVVP IPNGNDDEAE TGGGTITEEE EYLALKELED ALQIPIGNPH 240 DFQGMQTDPC HIDENDLSTS VEGRPDKSNS SDMIEEPLDN PENLDSIFDP PALPQLHQLH 300 QSPMYTTNDH NDECRKRTYP FEDNDPSLTK KNSISTNDDD ELVSNTASSP ENQAANMIPE 360 GYPQPGTNLG SEFESFLPKD YDYTLPSIKG GPSVKLQRHY IAVHLAQEKL KVLEADNNLK 420 LAAI

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MSCGGFTVPP GYGFHPTDEK LLSDLEEKNQ CKDSEITTII PEIDVCKHEP HELPESWDSQ  60
GKWYFFTPRE YKYPNSKRSN RTTREGFWKI TGKDRDIKAL RSKAVIERRR TLTFYKRGVS  120
KSQKTGWVIH EYYLIQAHSD PPKQIGDFVV CCLKYKSDNS DHDKDAPFFD RGSTSCSMAS  180
NVENQAEENW ASIKQVNVVP IPNGNDDEAE TGGGTITEEE EYLALKELED ALQIPIGNPH  240
DFQGMQTDPC HIDENDLSTS VEGRPDKSNS SDMIEEPLDN PENLDSIFDP PALPQLHQLH  300
QSPMYTTNDH NDECRKRTYP FEDNDPSLTK KNSISTNDDD ELVSNTASSP ENQAANMIPE  360
GYPQPGTNLG SEFESFLPKD YDYTLPSIKG GPSVKLQRHY IAVHLAQEKL KVLEADNNLK  420
LAAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	6e-33	NAC family protein