PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003693.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 678aa MW: 75730.3 Da PI: 6.0601

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003693.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.9	1.6e-39	8	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkkya 69 lp+GfrF+P+deel+++yL+kk ++k+ ++e +i+e+d++k+eP+dLp+ ++++ + +wyfFs+r k++ Rmu_sc0003693.1_g000011.1 8 LPKGFRFQPSDEELLSHYLEKKNQRKDPQIEAIIPEIDVCKHEPRDLPAlvftraeflerewftMADSPDMQWYFFSPRVFKHS 91 799*************************999***********66899999999988755555677***987766 PP NAM 70 ..tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++r+nr+t++g Wk++gkd++++++ +++++g k++L+fy+ +k +ktdWv+hey l Rmu_sc0003693.1_g000011.1 92 ksKSTRSNRTTEEGSWKKQGKDRRITRArSDKQIGGKRILTFYQTGVQKKQKTDWVIHEYYL 153 33688*****************9867889******9999999********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MSSGCITLPK GFRFQPSDEE LLSHYLEKKN QRKDPQIEAI IPEIDVCKHE PRDLPALVFT 60 RAEFLEREWF TMADSPDMQW YFFSPRVFKH SKSKSTRSNR TTEEGSWKKQ GKDRRITRAR 120 SDKQIGGKRI LTFYQTGVQK KQKTDWVIHE YYLTKADSDE QIGDFVLCRL KKKLDKSDHD 180 KQDGPFCGGG EPSRGSCSMA FNVENQASKQ LGNVLSISVE GQPDSCNSSD SDMVEELLDE 240 PGNLDSLFNQ PPPPDQLQSP IKLGNVSQTT NVHIDECRKR KYQLGDNDPS PTKKNHISTN 300 DVDELVSNTA YNSENHAADA IPKEYSQPGE NLGSDSFQSL EPLSINRELR DCSHHNNFIR 360 WDDFPPLIEG FDSSFAKFSD TVIDGGSSDR NTKVVYGSEF SPPATARLET KHVYVVGASL 420 IDPYGGFDRF KLELVQLRVN GVILAYGLDV SLSRLSWHEP QTLKLLYLVF LTFWMTIDSS 480 LSLSLRLSDL SRSRFDLSSY PESRPFPLSL TSVLITLRPQ SLVSASPSLS DLCHNCITSV 540 VVVSLATSPE VKALSIVVVC FNMQVIMLIP LTNLGYGFQV LCICFGRVVL DLRLLKMKRQ 600 MEKSKSCGTS SALAPKNKSS SSSQTNTSEG ESTTPIPPHE GTSTATPEVQ GTQGSQATEL 660 EDDGSVESIL EALKRKER

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MSSGCITLPK GFRFQPSDEE LLSHYLEKKN QRKDPQIEAI IPEIDVCKHE PRDLPALVFT  60
RAEFLEREWF TMADSPDMQW YFFSPRVFKH SKSKSTRSNR TTEEGSWKKQ GKDRRITRAR  120
SDKQIGGKRI LTFYQTGVQK KQKTDWVIHE YYLTKADSDE QIGDFVLCRL KKKLDKSDHD  180
KQDGPFCGGG EPSRGSCSMA FNVENQASKQ LGNVLSISVE GQPDSCNSSD SDMVEELLDE  240
PGNLDSLFNQ PPPPDQLQSP IKLGNVSQTT NVHIDECRKR KYQLGDNDPS PTKKNHISTN  300
DVDELVSNTA YNSENHAADA IPKEYSQPGE NLGSDSFQSL EPLSINRELR DCSHHNNFIR  360
WDDFPPLIEG FDSSFAKFSD TVIDGGSSDR NTKVVYGSEF SPPATARLET KHVYVVGASL  420
IDPYGGFDRF KLELVQLRVN GVILAYGLDV SLSRLSWHEP QTLKLLYLVF LTFWMTIDSS  480
LSLSLRLSDL SRSRFDLSSY PESRPFPLSL TSVLITLRPQ SLVSASPSLS DLCHNCITSV  540
VVVSLATSPE VKALSIVVVC FNMQVIMLIP LTNLGYGFQV LCICFGRVVL DLRLLKMKRQ  600
MEKSKSCGTS SALAPKNKSS SSSQTNTSEG ESTTPIPPHE GTSTATPEVQ GTQGSQATEL  660
EDDGSVESIL EALKRKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	5e-26	NAC family protein