PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003708.1_g000044.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 478aa MW: 51836.6 Da PI: 5.8169

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003708.1_g000044.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.5e-07	13	44	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e+++ l+C+ ++ lC C ++ H g Rmu_sc0003708.1_g000044.1 13 IPCDFCSEQPAVLYCKADSAKLCLFCDQHVH-G 44 57**************************999.4 PP
2	zf-B_box	21.2	6.1e-07	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ + + + C +++ lC++C H + H+++p+ Rmu_sc0003708.1_g000044.1 55 SQICDNCASDAVAFRCSTDNLVLCHECDWDAHGScsvsaaHDRTPI 100 689****99***************999954889999988876 PP
3	CCT	64.3	3.6e-22	430	473	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk++ Rmu_sc0003708.1_g000044.1 430 RGNAMLRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKAT 473 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MVSSKPATAG ESIPCDFCSE QPAVLYCKAD SAKLCLFCDQ HVHGANLLSR KHVRSQICDN 60 CASDAVAFRC STDNLVLCHE CDWDAHGSCS VSAAHDRTPI EGFSGCPSPL ELAALWGLDL 120 HKNIPGRVGG GGDPVDPTRN WELESSWSGV NFQDLIVPSQ NGEVYRNCGE SAPAKRQGSG 180 GSLGKYKQGI QKQLVELLKR DFDGGGENLE PAAAEGNDNG SNNVNVNVNV NVNAEGFDVE 240 NGRVDGVNVG SVAVSQPLLQ QQAPFTSLLM MAEGIVDRDM LWDTNPHGHN TQGTQIWDFN 300 LGKSRDHEET VPLDVPYGSG GSGFMIKNFS ELLKEASLTD TKMYGDMYQM NCPIGQDDIK 360 FNINSNNPAV SQGPATSESN NISIGRPSSG SAFGEDKGNI ATTEGPFLIR SDSLRTTGTK 420 ADMELLAQNR GNAMLRYKEK KKNRRYDKHI RYESRKARAD TRKRVKGRFV KATEAPDG

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MVSSKPATAG ESIPCDFCSE QPAVLYCKAD SAKLCLFCDQ HVHGANLLSR KHVRSQICDN  60
CASDAVAFRC STDNLVLCHE CDWDAHGSCS VSAAHDRTPI EGFSGCPSPL ELAALWGLDL  120
HKNIPGRVGG GGDPVDPTRN WELESSWSGV NFQDLIVPSQ NGEVYRNCGE SAPAKRQGSG  180
GSLGKYKQGI QKQLVELLKR DFDGGGENLE PAAAEGNDNG SNNVNVNVNV NVNAEGFDVE  240
NGRVDGVNVG SVAVSQPLLQ QQAPFTSLLM MAEGIVDRDM LWDTNPHGHN TQGTQIWDFN  300
LGKSRDHEET VPLDVPYGSG GSGFMIKNFS ELLKEASLTD TKMYGDMYQM NCPIGQDDIK  360
FNINSNNPAV SQGPATSESN NISIGRPSSG SAFGEDKGNI ATTEGPFLIR SDSLRTTGTK  420
ADMELLAQNR GNAMLRYKEK KKNRRYDKHI RYESRKARAD TRKRVKGRFV KATEAPDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-108	CO-like family protein