PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003760.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 486aa    MW: 54706.2 Da    PI: 6.0892
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003760.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2184139156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t++q++e+e+lF+++++p+ ++r++L+  lgL+ rqVk+WFqNrR+++k
  Rmu_sc0003760.1_g000009.1  84 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 139
                                688999***********************************************998 PP
2START41.33.9e-14287397393
                                HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                      START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWd 73 
                                a + ++elvk+ +a+ep+W+k s  eng+e l  +e+++               ++ea r+++vv+m++ +lv  +ld   +W 
  Rmu_sc0003760.1_g000009.1 287 AASSLEELVKMCTASEPLWMKNS--ENGMEMLNAEERARMfpwplnfkqnlsdLRTEATRDTAVVIMNSINLVDAFLDAT-KWM 367
                                678899*****************..**********999999***************************************.*** PP

                                TT-S....EEEEEEEECTT......EEEEE CS
                      START  74 etla....kaetlevissg......galql 93 
                                e ++    ka+t++vis +      g lql
  Rmu_sc0003760.1_g000009.1 368 ELFPsivsKAKTVQVISADpsgqakGSLQL 397
                                ****9************9988777777665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSTMGGGNVV NSETLFSSPM QNPNFNFMPF QPFSSILPKE ETGLMTRGKE EMMESGSGSE  60
HAEEKYSGNE QETEEQLQQQ PPKKKRYHRH TAHQIQEMEN LFKECPHPDD KQRQKLSLDL  120
GLKPRQVKFW FQNRRTQMKA QQDRADNVML RAENDTLKNE NYRLQAALRN IICPNCGGAA  180
MIGDIALDEH QLHLENARLR EELERVCCLS GYPGGRQIQT MGPAAPPMAA SLDLDMNIYS  240
RHFPDPMMSS CTDHHMITMS SLPPEPSHFP EGGLLLDDEK TLAMKLAASS LEELVKMCTA  300
SEPLWMKNSE NGMEMLNAEE RARMFPWPLN FKQNLSDLRT EATRDTAVVI MNSINLVDAF  360
LDATKWMELF PSIVSKAKTV QVISADPSGQ AKGSLQLDDG HCIFQRTTSV VVSQRYLDAD  420
SSYWHCNFHG CQTFCIGAAA SLWSASTLSR CPSVIIRLLF FPIKHGTVSN LNPRHGGFGV  480
ELSWAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.12e-99HD-ZIP family protein