PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003784.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 404aa MW: 44351.8 Da PI: 7.78

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003784.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	152	199	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Rmu_sc0003784.1_g000005.1 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199 8***********************9....677***************9 PP
2	HLH	32.4	1.6e-10	287	334	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Rmu_sc0003784.1_g000005.1 287 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 334 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MDPPVSLVNE CSYSNGNAAS YNLSEIWQFP MNSAGAGMGG GLGLRRPSFG QFGDVLGGGD 60 PNPMSLDHRA RKRRDAEDES SPSPKSSGNI GANGCDGKRL KTAGRCGDEN PEAKAEAETS 120 SGKPVEQNTQ PPDPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK 180 VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNTRMTPAI EVFPSKENGC DGKRLKTAGR 240 CGDENPEAKA EAETSSGKPV EQNTQPPDPP KQDYIHVRAR RGQATDSHSL AERARREKIS 300 ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNTR MTPAIEVFPS 360 KEFGQQTFDT AAMAFGTQPP REYSRGSSPE WLHMQVGGGF ERTT

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MDPPVSLVNE CSYSNGNAAS YNLSEIWQFP MNSAGAGMGG GLGLRRPSFG QFGDVLGGGD  60
PNPMSLDHRA RKRRDAEDES SPSPKSSGNI GANGCDGKRL KTAGRCGDEN PEAKAEAETS  120
SGKPVEQNTQ PPDPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  180
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNTRMTPAI EVFPSKENGC DGKRLKTAGR  240
CGDENPEAKA EAETSSGKPV EQNTQPPDPP KQDYIHVRAR RGQATDSHSL AERARREKIS  300
ERMKILQDLV PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNTR MTPAIEVFPS  360
KEFGQQTFDT AAMAFGTQPP REYSRGSSPE WLHMQVGGGF ERTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	3e-84	bHLH family protein