PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003813.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 1109aa MW: 122444 Da PI: 7.3586

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003813.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska++++v + qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Rmu_sc0003813.1_g000018.1 147 VCQVEDCKADLSHAKDYHRRHKVCDMHSKATTAMVGNNLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 224 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence
MEAFGGKPRN LYGPVVPDLK AVGKKSLEWD LNDWKWDGHV FTATPLNSVP SDCRSRQLFP 60 TGPETPSNAG WSNSSSSGSD DISPGNEKGK RELEKRRRAA VVENEEINDE AGSLNLKLGG 120 QVYPILEEDG KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATTAM 180 VGNNLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG GSMNDERGSS 240 YILITLLRIL SNMHSNSSDQ TKDQDLLSHL LKNIANNIGT VDGRNISALL QGSQGLLNGG 300 SSVQTAQKVP DIDFNGKEPS RPSVSTSKMD DCINLNGHLR PKGQCPTGPA SDKLLNRISS 360 VGGDLGSQAL SGVQATKSLS SRDSLPSKSV APEYGRIQLN EIDLNNTYDD SQEYLENLGN 420 SHVPVNPGTE SHGGPFWIQR DSQKSSPPQT SGNSDSAATR SPSSSSGEAQ SRTDRIVFKL 480 FGKDPSDLPF GLRSQVLGWL SSTPTDIESY IRPGCIILTI YLRLEKSTWE QLCCHLGSSL 540 AKLLDASNDP FWRTGWVYTR VQHFVAFVYN GQVVLDTPLP LRSHKTCRIS CIKPIAVSLS 600 ERAEFVVKGF NLSSSTTRLL CALEGKYLAQ ETCHDLMEAT DTTTEHDGLQ CLRFSCSIPD 660 ATGRGFIEVE DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AAEAANDVQR DPEIMEAKNQ 720 AMDFIHELGW LLHKSQVKLR IGHRDPKLDL FPFQRFRLLM EFSMEHDWCA VVNKLLGILY 780 EGTVDAGEHL SIELALLDMG LLHRAVQRNC KPMVEFLLRF VPDKGLGKAE LEEKQQVDRN 840 CNRFLFRPDV VGPMGLTPLH VAASTDGCEY VLDALTNDPG KVGIKAWKNA RDSLGLTPYD 900 YACLRGRYTY IHIVQRKISK TESGHVVLDI PGTILDKNTK QKQIDGHKSS KVASFNTEKI 960 AMTAIHGDCK LCNQKLAYGS TRSLVYRPAM LSMVAVAAVC VCVALLFKSS PEVVYVFRPF 1020 RWELLNLVLT FPNFHVLLFL LLLLLSSAPN IPSASASSSS SGDLSSPPQL SVSTTLASFS 1080 IKVSTFFISP RIYVHKVANF DHGDDFEGS

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence

MEAFGGKPRN LYGPVVPDLK AVGKKSLEWD LNDWKWDGHV FTATPLNSVP SDCRSRQLFP  60
TGPETPSNAG WSNSSSSGSD DISPGNEKGK RELEKRRRAA VVENEEINDE AGSLNLKLGG  120
QVYPILEEDG KTGKKTKIVG TTSNRAVCQV EDCKADLSHA KDYHRRHKVC DMHSKATTAM  180
VGNNLQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KTHPDTVVNG GSMNDERGSS  240
YILITLLRIL SNMHSNSSDQ TKDQDLLSHL LKNIANNIGT VDGRNISALL QGSQGLLNGG  300
SSVQTAQKVP DIDFNGKEPS RPSVSTSKMD DCINLNGHLR PKGQCPTGPA SDKLLNRISS  360
VGGDLGSQAL SGVQATKSLS SRDSLPSKSV APEYGRIQLN EIDLNNTYDD SQEYLENLGN  420
SHVPVNPGTE SHGGPFWIQR DSQKSSPPQT SGNSDSAATR SPSSSSGEAQ SRTDRIVFKL  480
FGKDPSDLPF GLRSQVLGWL SSTPTDIESY IRPGCIILTI YLRLEKSTWE QLCCHLGSSL  540
AKLLDASNDP FWRTGWVYTR VQHFVAFVYN GQVVLDTPLP LRSHKTCRIS CIKPIAVSLS  600
ERAEFVVKGF NLSSSTTRLL CALEGKYLAQ ETCHDLMEAT DTTTEHDGLQ CLRFSCSIPD  660
ATGRGFIEVE DHGLSSSFFP FIVAEQEVCS EICMLEDAIE AAEAANDVQR DPEIMEAKNQ  720
AMDFIHELGW LLHKSQVKLR IGHRDPKLDL FPFQRFRLLM EFSMEHDWCA VVNKLLGILY  780
EGTVDAGEHL SIELALLDMG LLHRAVQRNC KPMVEFLLRF VPDKGLGKAE LEEKQQVDRN  840
CNRFLFRPDV VGPMGLTPLH VAASTDGCEY VLDALTNDPG KVGIKAWKNA RDSLGLTPYD  900
YACLRGRYTY IHIVQRKISK TESGHVVLDI PGTILDKNTK QKQIDGHKSS KVASFNTEKI  960
AMTAIHGDCK LCNQKLAYGS TRSLVYRPAM LSMVAVAAVC VCVALLFKSS PEVVYVFRPF  1020
RWELLNLVLT FPNFHVLLFL LLLLLSSAPN IPSASASSSS SGDLSSPPQL SVSTTLASFS  1080
IKVSTFFISP RIYVHKVANF DHGDDFEGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	SBP family protein