PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003862.1_g000023.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family FAR1
Protein Properties Length: 136aa    MW: 15595.5 Da    PI: 7.5935
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003862.1_g000023.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.42.7e-1950135290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                                 Y eY+ ++GFsvr+ + +k+  n+ + + ++  skeg++ +++ + e ++  r  trtgC+ak+   ++++++w+ t ++ +H
  Rmu_sc0003862.1_g000023.1  50 LYYEYGARMGFSVRIMQRRKT--NNVVRQVNYAYSKEGFKLDSDPS-EVKKADRLDTRTGCTAKILFGLQDNNVWKATLFVPDH 130
                                79**************98888..889****************9999.9999********************************* PP

                       FAR1  86 nHela 90 
                                nH+la
  Rmu_sc0003862.1_g000023.1 131 NHKLA 135
                                ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    
MPTVSKVEDD QEHNKTIDLG KDSMIVNRQA SNNDNLYGVI VNSEEEAYNL YYEYGARMGF  60
SVRIMQRRKT NNVVRQVNYA YSKEGFKLDS DPSEVKKADR LDTRTGCTAK ILFGLQDNNV  120
WKATLFVPDH NHKLAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.11e-14FAR1 family protein