PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003874.1_g000010.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 427aa MW: 47144.5 Da PI: 9.736

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003874.1_g000010.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Rmu_sc0003874.1_g000010.1 257 FSCNYCQRKFYSSQALGGHQNAH 279 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MTASATQTAW YDDGGGAGRS GRILVGVVGY SASGCSWRSP LLGFSLRFAL LPQAKATRLF 60 ASYGSGRQVE AKVPKCLGAQ IILRWVWALV KFDPFLGVRL LIFEFLTLSV TFELLVSGSP 120 LLGDHITGYG YGYGYGYYYI FTALVTYAVQ RCRSTSSHMP QASDYPQSEN SSLKVSIMET 180 QSQKPQKQPV PEDTNQQLPQ QAPKPADIVL DLSLISNKIS DQRLNTELNL IDCVDLNMCS 240 ETSTDDPKGT SHEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKKAV AHKIGAVSDN 300 FRLLSHRFSS MASLPLHGSF NNRSLGIQVH STIHKPSWYQ SSLYGHNGNF LRHPIDQQPA 360 IGRLAAAGSM SSSSSSGGGM GRFETSTARK FFPVAERIGR FWWNSSVSHL KTTQDHELQK 420 LDLSLKL

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MTASATQTAW YDDGGGAGRS GRILVGVVGY SASGCSWRSP LLGFSLRFAL LPQAKATRLF  60
ASYGSGRQVE AKVPKCLGAQ IILRWVWALV KFDPFLGVRL LIFEFLTLSV TFELLVSGSP  120
LLGDHITGYG YGYGYGYYYI FTALVTYAVQ RCRSTSSHMP QASDYPQSEN SSLKVSIMET  180
QSQKPQKQPV PEDTNQQLPQ QAPKPADIVL DLSLISNKIS DQRLNTELNL IDCVDLNMCS  240
ETSTDDPKGT SHEPRVFSCN YCQRKFYSSQ ALGGHQNAHK RERTLAKKAV AHKIGAVSDN  300
FRLLSHRFSS MASLPLHGSF NNRSLGIQVH STIHKPSWYQ SSLYGHNGNF LRHPIDQQPA  360
IGRLAAAGSM SSSSSSGGGM GRFETSTARK FFPVAERIGR FWWNSSVSHL KTTQDHELQK  420
LDLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-41	C2H2 family protein