PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003878.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 258aa    MW: 29375.6 Da    PI: 7.0597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003878.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1462.1e-4561372128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratks 80 
                                + GfrF Pt+eelv++yL +k+e+k+  ++ +vi+++diy++ePw+Lpk     +++++++w+fF++r++++ +g r+nr+t+ 
  Rmu_sc0003878.1_g000016.1   6 TTGFRFYPTEEELVSFYLLNKLESKHqDSIRRVIPDLDIYSIEPWELPKyaaeLCRGDTEQWFFFTPRQQREVQGGRPNRTTAY 89 
                                68*********************9994555677***************645543344777************************ PP

                        NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                gyWkatg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  Rmu_sc0003878.1_g000016.1  90 GYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 137
                                **********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MDQALTTGFR FYPTEEELVS FYLLNKLESK HQDSIRRVIP DLDIYSIEPW ELPKYAAELC  60
RGDTEQWFFF TPRQQREVQG GRPNRTTAYG YWKATGSPGY VYSSDNRVIG VKKTMVFYKG  120
KAPTGRKTKW KMNEYRAIEE TAAPSASTSN SASTAIIPKL RHEFRLCRVY IVSGSSRAFD  180
RRPLEGSRDT SHRQSDLTGS SASSSHQAAM VAEKTSSSSD THSNSGDLAD FQAGNNNDWE  240
MNDDLQQPLW EWEQLILL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-86NAC family protein