PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003878.1_g000030.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 362aa    MW: 41449.8 Da    PI: 7.8362
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003878.1_g000030.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.6e-1052100155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +++kGV     +g W A+I+       +  r++lg+f ++ +Aa a++ a+ kl++
  Rmu_sc0003878.1_g000030.1  52 TKFKGVVLQQ-NGHWGAQIYA------NhNRVWLGTFNSEVDAAMAYDSAAIKLRN 100
                                699***9877.8******999......44**********99*************97 PP
2B380.71.4e-25180277184
                                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                f+k+ltpsdv+k++rlv+pk++a+++            + +++ +++l+++de+ r W+++++y+k+s+++v+t+GW++Fvk+ 
  Rmu_sc0003878.1_g000030.1 180 FQKELTPSDVGKLNRLVIPKNYATKYfpridesmqdglDDNPAPDVQLSFYDENMRPWKFRYCYWKSSQSFVFTRGWNRFVKES 263
                                99**********************************9988888999************************************** PP

                                T--TT-EEEEE..E CS
                         B3  73 gLkegDfvvFk..l 84 
                                 Lk++D++ F+  +
  Rmu_sc0003878.1_g000030.1 264 LLKANDIIRFYecH 277
                                **********9543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MEEDLSSMVS NAGTTRQKRT YQAEASVSSI TGFLVQESKR LSHGSSNLSA NTKFKGVVLQ  60
QNGHWGAQIY ANHNRVWLGT FNSEVDAAMA YDSAAIKLRN GECQRNFAWT KVTDQEPYFQ  120
NLYSQEAVLN MIKDGTYQAR FLEFRMSHQA AESMQKIGMA ECNSARVQQS KRDILHKQLF  180
QKELTPSDVG KLNRLVIPKN YATKYFPRID ESMQDGLDDN PAPDVQLSFY DENMRPWKFR  240
YCYWKSSQSF VFTRGWNRFV KESLLKANDI IRFYECHIRE GDKEAKSFYM IKIDRAESSD  300
VIVENAGLCV SPALTPLHAK KFGEEKDDIK TQIAEVIDET PQVNGDNKRI RLFGVCMVVG  360
EN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.19e-92RAV family protein