PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003941.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 564aa    MW: 61993.8 Da    PI: 4.87
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003941.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4501.5e-1371955581374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl. 83 
                                lv++Ll+cAeav++++l+ a+al++++ +la ++  +m+++a+yf+eALa+r++r        + p+e+s   +s+   +l++ 
  Rmu_sc0003941.1_g000002.1 195 LVHTLLACAEAVQQDNLKVADALVKQVGTLAVSQTGAMRKVATYFAEALARRIYR--------VYPQEDSL--VSSYSDILQMh 268
                                689****************************************************........44555553..33333333444 PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                f+e++P+lkf+h+taNqaIlea+++++rvH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g++La+
  Rmu_sc0003941.1_g000002.1 269 FYETCPYLKFAHFTANQAILEAFATATRVHVVDFGLKQGMQWPALMQALALRPGGPPVFRLTGVGPPQPDNTDALQQVGWKLAQ 352
                                ************************************************************************************ PP

                       GRAS 168 fAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                fAe++gv+fef++   va++l+dle+++L+v+p   EalaVn+v++lh ll++++++e+    v+  +k ++Pk+v++veqea+
  Rmu_sc0003941.1_g000002.1 353 FAETMGVEFEFEFRgfVANSLADLEPSMLDVRPpeVEALAVNSVFELHCLLARPGAIEK----VMASIKAMNPKIVTMVEQEAN 432
                                *******9988764449****************9999**********************....********************* PP

                       GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                                hn++ Fl+rf e+l+yys+lfdsle +  + s+e+ ++++++lgr+i+nvvac g +r+erhetl +Wr+rl++aGF+pv+l++
  Rmu_sc0003941.1_g000002.1 433 HNGPVFLDRFNESLHYYSSLFDSLEGS--SGSSEDLVMSEVYLGRQICNVVACDGGDRVERHETLTQWRNRLTRAGFEPVHLGS 514
                                ************************999..799**************************************************** PP

                       GRAS 332 kaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++ kqa++ll+ ++ + gy+vee++gsl+lgW++rpL+++SaW+
  Rmu_sc0003941.1_g000002.1 515 NVFKQAQTLLALYAgGGGYQVEENNGSLTLGWHTRPLIATSAWQ 558
                                **************9999*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    
MKRNHQVSCG GGQNGSNTSV SNSSKAKIWE EEQESGSMDE LLAVLGYKVR SDDMADVAEK  60
LEQLEMVMGS AQQDGISQLS DTVHYNPSDL SGWLQTMLSE LNPIDDVLSN SQQQKQKQKQ  120
KQIETQSRVI YDDNSEYDLR AIPGIAAYPQ SQLQTATEIN SKRLKTSTGS ASSSSSSIEP  180
RPLVVVDAQD TGVRLVHTLL ACAEAVQQDN LKVADALVKQ VGTLAVSQTG AMRKVATYFA  240
EALARRIYRV YPQEDSLVSS YSDILQMHFY ETCPYLKFAH FTANQAILEA FATATRVHVV  300
DFGLKQGMQW PALMQALALR PGGPPVFRLT GVGPPQPDNT DALQQVGWKL AQFAETMGVE  360
FEFEFRGFVA NSLADLEPSM LDVRPPEVEA LAVNSVFELH CLLARPGAIE KVMASIKAMN  420
PKIVTMVEQE ANHNGPVFLD RFNESLHYYS SLFDSLEGSS GSSEDLVMSE VYLGRQICNV  480
VACDGGDRVE RHETLTQWRN RLTRAGFEPV HLGSNVFKQA QTLLALYAGG GGYQVEENNG  540
SLTLGWHTRP LIATSAWQLA SPTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein