PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003949.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 229aa    MW: 25131.2 Da    PI: 6.2323
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003949.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB173.71.9e-5448144197
                      NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl+
  Rmu_sc0003949.1_g000009.1  48 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLT 131
                                69********************************************************************************** PP

                      NF-YB  85 vylkkyrelegek 97 
                                +yl+++re+eg++
  Rmu_sc0003949.1_g000009.1 132 LYLHRFREMEGDR 144
                                ***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSLVNPCAGL KLSEINMKLA EINHTKNSAA ITNNGGAAAA TDENECTVRE QDRFMPIANV  60
IRIMRKILPP HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK  120
LGFDDYIEPL TLYLHRFREM EGDRGSMRAE TLMKTSSRAM TAAEYHAAAA GSFAGFAPFH  180
HHGFFGYLKD APISNGAAGT SLSQQANAVA AMANGDHQAS HSQYDDNNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.28e-71NF-YB family protein