PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003971.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CO-like

Protein Properties

Length: 417aa MW: 45008.2 Da PI: 5.5141

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003971.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.1	5.6e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Rmu_sc0003971.1_g000003.1 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	23.3	1.3e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + ++ lC++C +H g H++++ Rmu_sc0003971.1_g000003.1 46 LLCERCNSQPALVRCAEERVSLCQNCDWMGH-GastsaasHKRQT 89 57*****************************.5588888888765 PP
3	CCT	58.5	2.3e-20	358	401	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ Rmu_sc0003971.1_g000003.1 358 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 401 899*************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 AEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL ELPSAAAGES 120 ACEQEMGLMS IAENSTGSAW SPPENNTREN ASDKFEVSDV GAMDKSDGVV GSSSVPALNS 180 APQVVGQVPG SANSTLPKLY CHGTKSPGLC EDDDLYGDFD MDEMDLSLEN YDELFGVSLN 240 HSEELFKNGG IDSLFGARNM SRAQELIAAE GSSIGRVNAL QQPACSTAAS ADSVMSTKTE 300 PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN 360 AVMRYKEKKK ARKFEKRVRY ASRKARADVR KRVKGRFIKA GEAYDYDPLN QARTRSY

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
AEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL ELPSAAAGES  120
ACEQEMGLMS IAENSTGSAW SPPENNTREN ASDKFEVSDV GAMDKSDGVV GSSSVPALNS  180
APQVVGQVPG SANSTLPKLY CHGTKSPGLC EDDDLYGDFD MDEMDLSLEN YDELFGVSLN  240
HSEELFKNGG IDSLFGARNM SRAQELIAAE GSSIGRVNAL QQPACSTAAS ADSVMSTKTE  300
PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN  360
AVMRYKEKKK ARKFEKRVRY ASRKARADVR KRVKGRFIKA GEAYDYDPLN QARTRSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-129	CO-like family protein