PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0003972.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 428aa    MW: 49015.4 Da    PI: 4.4175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0003972.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.12.8e-22151492128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk..kvka.....eekewyfFskrdkkyatgkrknr 76 
                                 pG rF P ++elv +yLk+ ++g++++  +  + ++d+y + ePw++ +  k+k       +k++yfF++++k ++t+kr +r
  Rmu_sc0003972.1_g000001.1  15 LPGQRFCPMEDELVLFYLKPMLSGQNVPGRNRvVFDCDLYGHqEPWEIWEafKTKRphdlrLNKDIYFFTQHKKMSSTDKRVRR 98 
                                59************************8775544999****8879****742422224333334588****************** PP

                        NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 + sg+Wk   + k+v s  +g++vglkk  ++ +  + + ++  W++he+ l
  Rmu_sc0003972.1_g000001.1  99 NVGSGTWKGDDSGKPVRSVeTGRAVGLKKRYAYKN--EDSVHNGCWILHEFYL 149
                                ********9999999998768899********984..5555699*******87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MQQEFSMEES RRNHLPGQRF CPMEDELVLF YLKPMLSGQN VPGRNRVVFD CDLYGHQEPW  60
EIWEAFKTKR PHDLRLNKDI YFFTQHKKMS STDKRVRRNV GSGTWKGDDS GKPVRSVETG  120
RAVGLKKRYA YKNEDSVHNG CWILHEFYLD RSLRDKKQIV KDYVLCRLRK NGEPKTKIEK  180
KRKKREEEEV LENNYALDDG KNSNREQEEL LEPQAKRQRT VPSIDNAPLT MPSEDDAAFA  240
AELEESLECF EDDNAPSEAH AIDFQGEENG GQQPLAEMQA GPSFGDDHGI FNMLPEEDFL  300
WEELLKEMGI EKDEPVLNGE SINIDMAEEK ENSTLLYAPT SSMSAAYDGC NDMPYLSSGK  360
GCLDPSGSNN VCGGSIGFQD GAYWVESLLE VPSTVEQQKT ADEDCSDWLE SINFSPEENN  420
LLWSDMQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174183PKTKIEKKRK
2180184KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-15NAC family protein