PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0004019.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 157aa    MW: 18522.9 Da    PI: 8.8716
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0004019.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.88.1e-5781371129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL+      ++e++ewyfFs++dkky+tg+r+nrat +g
  Rmu_sc0004019.1_g000005.1   8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAG 90 
                                69****************************.9***************953432234667************************* PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle
  Rmu_sc0004019.1_g000005.1  91 FWKATGRDKSVYD-KSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 137
                                *************.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQDRCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKSKLIGM RKTLVFYKGR  120
APNGQKTDWI MHEYRLESDE NGPPQASTTE KHHLSPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-102NAC family protein